Items where Author is "Allen, JI"

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Polimene, L; Sailley, SE; Clark, DR; Mitra, A; Allen, JI. 2016 Biological or Microbial Carbon Pump? The role of phytoplankton stoichiometry in ocean carbon sequestration. Journal of Plankton Research. 10.1093/plankt/fbw091

Beaulieu, C; Cole, H; Henson, S; Yool, A; Anderson, T; de Mora, L; Buitenhuis, ET; Butenschon, M; Totterdell, IJ; Allen, JI. 2016 Marine regime shifts in ocean biogeochemical models: a case study in the Gulf of Alaska. Biogeosciences, 13 (15). 4533-4553. 10.5194/bg-13-4533-2016

Queiros, AM; Huebert, KB; Keyl, F; Fernandes, JA; Stolte, W; Maar, M; Kay, S; Jones, MC; Hamon, KG; Hendriksen, G; Vermard, Y; Marchal, P; Teal, LR; Somerfield, PJ; Austen, MC; Barange, M; Sell, AF; Allen, JI; Peck, MA. 2016 Solutions for ecosystem-level protection of ocean systems under climate change. Global Change Biology, 22. 3927-3936. 10.1111/gcb.13423

Butenschon, M; Clark, JR; Aldridge, JN; Allen, JI; Artioli, Y; Blackford, JC; Bruggeman, J; Cazenave, P; Ciavatta, S; Kay, S; Lessin, G; van Leeuwen, S; Van der Molen, J; de Mora, L; Polimene, L; Sailley, SF; Stephens, N; Torres, R. 2016 ERSEM 15.06: a generic model for marine biogeochemistry and the ecosystem dynamics of the lower trophic levels. Geoscientific Model Development, 9 (4). 1293-1339. 10.5194/gmd-9-1293-2016

Ciavatta, S; Kay, S; Saux Picart, S; Butenschon, M; Allen, JI. 2016 Decadal reanalysis of biogeochemical indicators and fluxes in the North West European shelf-sea ecosystem. Journal of Geophysical Research-Oceans. 10.1002/2015JC011496 (In Press)

Hyder, K; Rossberg, AG; Allen, JI; Austen, MC; Barciela, RM; Bannister, HJ; Blackwell, PG; Blanchard, JL; Burrows, MT; Defriez, E; Dorrington, TS; Edwards, KP; Garcia-Carreras, B; Heath, MR; Hembury, DJ; Heymans, JJ; Holt, JT; Houle, JE; Jennings, S; Mackinson, S; Malcolm, SJ; McPike, R; Mee, LD; Mills, DK; Montgomery, C; Pearson, D; Pinnegar, JK; Pollicino, M; Popova, EE; Rae, L; Rogers, SI; Speirs, D; Spence, MA; Thorpe, R; Turner, RK; Van der Molen, J; Yool, A; Paterson, DM. 2015 Making modelling count - increasing the contribution of shelf-seas community and ecosystem models to policy development and management. Marine Policy, 61. 291-302. 10.1016/j.marpol.2015.07.015

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Saux Picart, S; Allen, JI; Butenschon, M; Artioli, Y; de Mora, L; Wakelin, S; Holt, JT. 2015 What can ecosystem models tell us about the risk of eutrophication in the North Sea?. Climatic Change. 10.1007/s10584-014-1071-x

Smyth, TJ; Atkinson, A; Widdicombe, S; Frost, MT; Allen, JI; Fishwick, J; Queiros, AM; Sims, DW; Barange, M. 2015 The Western Channel Observatory. Progress in Oceanography, 137. 335-341. 10.1016/j.pocean.2015.05.020

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Butenschon, M; Clark, JR; Aldridge, JN; Allen, JI; Artioli, Y; Blackford, JC; Bruggeman, J; Cazenave, P; Ciavatta, S; Kay, S; Lessin, G; van Leeuwen, S; Van der Molen, J; de Mora, L; Polimene, L; Sailley, SF; Stephens, N; Torres, R. 2015 ERSEM 15.06: a generic model for marine biogeochemistry and the ecosystem dynamics of the lower trophic levels. Geoscientific Model Development Discussions, 8 (8). 7063-7187. 10.5194/gmdd-8-7063-2015

Beaulieu, C; Cole, H; Henson, S; Yool, A; Anderson, TR; de Mora, L; Buitenhuis, ET; Butenschon, M; Totterdell, IJ; Allen, JI. 2015 Marine regime shifts in ocean biogeochemical models: a case study in the Gulf of Alaska. Biogeosciences Discussions, 12 (16). 14003-14048. 10.5194/bgd-12-14003-2015

Polimene, L; Mitra, A; Sailley, SF; Ciavatta, S; Widdicombe, CE; Atkinson, A; Allen, JI. 2015 Decrease in diatom palatability contributes to bloom formation in the Western English Channel. Progress in Oceanography, 137. 484-497. 10.1016/j.pocean.2015.04.026

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Queiros, AM; Bruggeman, J; Stephens, N; Artioli, Y; Butenschon, M; Blackford, JC; Widdicombe, S; Allen, JI; Somerfield, PJ. 2015 Placing biodiversity in ecosystem models without getting lost in translation. Journal of Sea Research. 10.1016/j.seares.2014.10.004

Sailley, SF; Polimene, L; Mitra, A; Atkinson, A; Allen, JI. 2015 Impact of zooplankton food selectivity on plankton dynamics and nutrient cycling. Journal of Plankton Research, 37 (3). 519-529. 10.1093/plankt/fbv020

Kwiatkowski, L; Yool, A; Allen, JI; Anderson, TR; Barciela, R; Buitenhuis, ET; Butenschon, M; Enright, C; Halloran, PR; Le Quere, C; de Mora, L; Racault, M-FLP; Sinha, B; Totterdell, IJ; Cox, PM. 2014 iMarNet: an ocean biogeochemistry model intercomparison project within a common physical ocean modelling framework. Biogeosciences, 11 (24). 7291-7304. 10.5194/bg-11-7291-2014

Holt, JT; Allen, JI; Anderson, TR; Brewin, RJW; Butenschon, M; Harle, J; Huse, G; Lehodey, P; Lindemann, C; Memery, L; Salihoglu, B; Senina, I; Yool, A. 2014 Challenges in integrative approaches to modelling the marine ecosystems of the North Atlantic: Physics to fish and coasts to ocean. Progress in Oceanography, 129. 285-313. 10.1016/j.pocean.2014.04.024

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Barange, M; Merino, G; Blanchard, JL; Scholtens, J; Harle, J; Allison, EH; Allen, JI; Holt, JT; Jennings, S. 2014 Impacts of climate change on marine ecosystem production in societies dependent on fisheries. Nature Climate Change. 6, pp. 10.1038/NCLIMATE2119

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Ciavatta, S; Torres, R; Martinez-Vicente, V; Smyth, TJ; Dall’Olmo, G; Polimene, L; Allen, JI. 2014 Assimilation of remotely-sensed optical properties to improve marine biogeochemistry modelling. Progress in Oceanography, 127. 74-95. 10.1016/j.pocean.2014.06.002

Chust, G; Allen, JI; Bopp, L; Schrum, C; Holt, JT; Tsiaras, K; Zavatarelli, M; Chifflet, M; Cannaby, Hr; Dadou, I; Daewel, U; Wakelin, SL; Machu, E; Pushpadas, D; Butenschon, M; Artioli, Y; Petihakis, G; Smith, C; Garçon, VC; Goubanova, K; Le Vu, B; Fach, BA; Salihoglu, B; Clementi, E; Irigoien, X. 2014 Biomass changes and trophic amplification of plankton in a warmer ocean. Global Change Biology. n/a-n/a. 10.1111/gcb.12562

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Artioli, Y; Blackford, JC; Nondal, G; Bellerby, RGJ; Wakelin, SL; Holt, JT; Butenschon, M; Allen, JI. 2014 Heterogeneity of impacts of high CO<sub>2</sub> on the North Western European Shelf. Biogeosciences, 11 (3). 601-612. 10.5194/bg-11-601-2014

Polimene, L; Brunet, C; Butenschon, M; Martinez-Vicente, V; Widdicombe, CE; Torres, R; Allen, JI. 2014 Modelling a light-driven phytoplankton succession. Journal of Plankton Research, 36 (1). 214-229. 10.1093/plankt/fbt086

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Smyth, TJ; Allen, JI; Atkinson, A; Bruun, JT; Harmer, RA; Pingree, RD; Widdicombe, CE; Somerfield, PJ. 2014 Ocean Net Heat Flux Influences Seasonal to Interannual Patterns of Plankton Abundance. PLoS ONE, 9 (6). e98709. 10.1371/journal.pone.0098709

Glibert, PM; Allen, JI; Artioli, Y; Beusen, A; Bouwman, L; Harle, J; Holmes, R; Holt, JT. 2014 Vulnerability of coastal ecosystems to changes in harmful algal bloom distribution in response to climate change: projections based on model analysis. Global Change Biology. n/a-n/a. 10.1111/gcb.12662

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de Mora, L; Butenschon, M; Allen, JI. 2013 How should sparse marine in situ measurements be compared to a continuous model: an example. Geoscientific Model Development, 6 (2). 533-548. 10.5194/gmd-6-533-2013

Rose, KA; Allen, JI. 2013 Modeling marine ecosystem responses to global climate change: Where are we now and where should we be going?. Ecological Modelling, 264. 1-6. 10.1016/j.ecolmodel.2013.04.014

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Hirata, T; Saux-Picart, S; Hashioka, T; Aita-Noguchi, M; Sumata, H; Shigemitsu, M; Allen, JI; Yamanaka, Y. 2013 A comparison between phytoplankton community structures derived from a global 3D ecosystem model and satellite observation. Journal of Marine Systems, 109-11. 129 - 137. 10.1016/j.jmarsys.2012.01.009

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Christensen, A; Butenschon, M; Gurkan, Z; Allen, JI. 2013 Towards an integrated forecasting system for fisheries on habitat-bound stocks. Ocean Science. 261 - 279. 10.5194/os-9-261-2013

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Blanchard, J; Jennings, S; Holmes, R; Harle, J; Merino, G; Allen, JI; Holt, JT; Dulvy, NK; Barange, M. 2012 Potential consequences of climate change for primary production and fish production in large marine ecosystems. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences, 367. 2979 - 2989. 10.1098/rstb.2012.0231

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Merino, G; Barange, M; Blanchard, J; Harle, J; Holmes, R; Allen, JI; Allison, EH; Badjeck, MC; Dulvy, NK; Holt, JT; Jennings, S; Mullon, C; Rodwell, LD. 2012 Can marine fisheries and aquaculture meet fish demand from a growing human population in a changing climate?. Global Environmental Change, 22. 795 - 806. 10.1016/j.gloenvcha.2012.03.003

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Bruun, JT; Somerfield, PJ; Allen, JI. 2012 Applications of Box Jenkins Transfer function methods to identify seasonal and longer term. ICES CM. R:22 - R:22.

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Bruun, JT; Somerfield, PJ; Allen, JI; Vichi, M; McKiver, W; Racault, M-FLP; Johannessen, J; Bellerby, RGJ; Waldron, HN. 2012 New methodologies to build an integrated global plankton database: the GreenSeas Analysis Framework. ICES CM. R:10 - R:10.

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Polimene, L; Archer, SD; Butenschon, M; Allen, JI. 2012 A mechanistic explanation of the Sargasso Sea DMS summer paradox. Biogeochemistry, 110. 243 - 255. 10.1007/s10533-011-9674-z

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Wakelin, SL; Holt, JT; Blackford, JC; Allen, JI; Butenschon, M; Artioli, Y. 2012 Modeling the carbon fluxes of the northwest European continental shelf: Validation and budgets.. Journal of Geophysical Research-Oceans, 117. 0 - 0. 10.1029/2011jc007402

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Artioli, Y; Blackford, JC; Butenschon, M; Holt, JT; Wakelin, SL; Thomas, H; Borges, AV; Allen, JI. 2012 The carbonate system of the NW European shelf: sensitivity and model validation. Journal of Marine Systems, 102-10. Jan-13. 10.1016/j.jmarsys.2012.04.006

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Christensen, A; Butenschon, M; Gurkan, Z; Allen, JI. 2012 Towards an integrated forecasting system for pelagic fisheries. Ocean Science Discussions, 9. 1437 - 1479. 10.5194/osd-9-1437-2012

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Polimene, L; Brunet, C; Allen, JI; Butenschon, M; White, DA; Llewellyn, CA. 2012 Modelling xanthophyll photoprotective activity in phytoplankton. Journal of Plankton Research, 34. 196 - 207. 10.1093/plankt/fbr102

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Ciavatta, S; Torres, R; Saux-Picart, S; Allen, JI. 2011 Can ocean color assimilation improve biogeochemical hindcasts in shelf seas?. Journal of Geophysical Research-Oceans, 116. Jan-19. 10.1029/2011JC007219

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Shutler, J; Smyth, TJ; Saux-Picart, S; Wakelin, SL; Hyder, P; Orekhov, P; Grant, MG; Tilstone, GH; Allen, JI. 2011 Evaluating the ability of a hydrodynamic ecosystem model to capture inter- and intra-annual spatial characteristics of chlorophyll-a in the north east Atlantic. Journal of Marine Systems, 88. 169 - 182. 10.1016/j.jmarsys.2011.03.013

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Polimene, L; Archer, SD; Butenschon, M; Allen, JI. 2011 A mechanistic explanation of the Sargasso Sea DMS summer paradox. Biogeochemistry. Jan-13. 10.1007/s10533-011-9674z

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Allen, JI; Polimene, L. 2011 Linking physiology to ecology: towards a new generation of plankton models. Journal of Plankton Research, 33. 989 - 997. 10.1093/plankt/fbr032

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Vichi, M; Allen, JI; Masina, S; Hardman-Mountford, NJ. 2011 The emergence of ocean biogeochemical provinces: A quantitative assessment and a diagnostic for model evaluation. Global Biogeochemical Cycles, 25. 0 - 0. 10.1029/2010GB003867

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Glibert, PM; Allen, JI; Bouwman, AF; Brown, CW; Flynn, KJ; Lewitus A, J; Madden, CJ. 2010 Modeling of HABs and eutrophication Status advances challenges. Journal of Marine Systems, 83 (3. 262 - 275. 10.1016/j.jmarsys.2010.05.004

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Le Clainche, Y; Vezina, A; Levasseur, M; Cropp, R; Gunson, JR; Vallina, SM; Vogt, M; Lancelot, C; Allen, JI; Archer, SD; Bopp, L; Laurent, L; Deal, C; Elliott, S; Jin, MM; Malin, G; Schoemann, V; Simo, F; Six, KD; Stefels, J. 2010 A first appraisal of prognostic ocean DMS models and prospects for their use in climate models. Global Biogeochemical Cycles, 24. 0 - 0. 10.1029/2009GB003721

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Allen, JI. 2010 Marine ecosystem response to multiple climatic and anthropogenic drivers: A modelling approach. Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology, 157. 01-Jan. 10.1016/j.cbpa.2010.06.002

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Allen, JI; Fulton, EA. 2010 Top-down bottom-up or middle-out? Avoiding extraneous detail and over-generality in marine ecosystem models. Progress in Oceanography, 84 (1-. 129 - 133. 10.1016/j.pocean.2009.09.016

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Allen, JI; Aiken, J; Anderson, TR; Buitenhuis, E; Cornell, S; Geider, RJ; Haines, K; Hirata, T; Holt, JT; Le Quere, C; Hardman-Mountford, NJ; Ross, RN; Sinha, B; While, J. 2010 Marine ecosystem models for earth systems applications: The MarQUEST experience. Journal of Marine Systems, 81 (1-. 19 - 33. 10.1016/j.jmarsys.2009.12.017

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Blackford, JC; Allen, JI; Anderson, TR; Rose, KA. 2010 Challenges for a new generation of marine ecosystem models: Overview of the Advances in Marine Ecosystem Modelling Research (AMEMR) Symposium 23-26 June 2008 Plymouth UK Preface. Journal of Marine Systems, 81. 01-Mar. 10.1016/j.jmarsys.2009.12.018

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Rose, KA; Allen, JI; Artioli, Y; Barange, M; Blackford, JC; Carlotti, F; Cropp, R; Daewel, U; Flynn, KJ; Hill, SL; Hille Ris Lambers, R; Huse, G; Mackinson, S; Megrey, B; Moll, A; Rivkin, R; Salihoglu, B; Schrum, C; Shannon, L; Shin, Y-J; Smith, SL; Smith, C; Solidoro, C; St John, M; Zhou, M. 2010 End-To-End Models for the Analysis of Marine Ecosystems: Challenges Issues and Next Steps. Marine and Coastal Fisheries: Dynamics Management and Ecosystem Science, 2. 115 - 130. 10.1577/C09-059.1

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Stromberg, KHP; Smyth, TJ; Allen, JI; Pitois, SG; O'Brien, TD. 2009 Estimation of global zooplankton biomass from satellite ocean colour. Journal of Marine Systems, 78. 18 - 27. 10.1016/j.jmarsys.2009.02.004

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Lewis, K; Allen, JI. 2009 Validation of a hydrodynamic-ecosystem model simulation with time-series data collected in the western English Channel. Journal of Marine Systems, 77. 296 - 311. 10.1016/j.jmarsys.2007.12.013

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Holt, JT; Harle, J; Proctor, R; Michel, S; Ashworth, M; Batstone, C; Allen, JI; Holmes, R; Smyth, TJ; Haines, K; Bretherton, D; Smith, GC. 2009 Modelling the global coastal ocean. Philosophical Transactions of the Royal Society of London Series A-Mathematical Physical and Engineering Sciences. 939 - 951. 10.1098/rsta.2008.0210

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Stow, C; Jolliff, J; McGillicuddy, DJ; Doney, SC; Allen, JI; Friedrichs, MAM; Rose, KA; Wallheadg, P. 2009 Skill assessment for coupled biological/physical models of marine systems. Journal of Marine Systems, 01-Feb. Apr-15. 10.1016/j.jmarsys.2008.03.011

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Allen, JI; Somerfield, PJ. 2009 A multivariate approach to model skill assessment. Journal of Marine Systems, 76. 83 - 94. 10.1016/j.jmarsys.2008.05.009

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Fox, C; Harris, RP; Sundby, S; Achterberg, EP; Allen, JI; Allen, J; Baker, AR; Brussaard, CPD; Buckley, P; Cook, E; Dye, S; Edwards, M; Fernand, L; Kershaw, P; Metcalfe, JD; Østerhus, S; Potter, T; Sakshaug, E; Speirs, D; Stenevik, E; St John, M; Thingstad, TF; Wilson, B. 2009 Transregional linkages in the North-Eastern Atlantic - An ‘end-to-end ’ analysis of pelagic ecosystems. Oceanography and Marine Biology, 47. 1-75.

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Vichi, M; Allen, JI; Hardman-Mountford, NJ. 2008 Biogeographic validation of a global ocean biogeochemistry model. Conference Proceedings. 38 - 38.

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Allen, JI; Smyth, TJ; Siddorn, JR; Holt, JT. 2008 How well can we forecast high biomass algal bloom events in a eutrophic coastal sea?. Harmful Algae, 8(1). 70 - 76. 10.1016/j.hal.2008.08.024

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Aveytua-Alcazar, L; Camacho-Ibar, VF; Souza, AJ; Allen, JI; Torres, R. 2008 Modelling Zostera marina and Ulva spp. in a coastal lagoon. Ecological Modelling, 218(3-. 354 - 366. 10.1016/j.ecolmodel.2008.07.019

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Allen, JI; Holt, JT; Proctor, R; Blackford, JC. 2007 Error quantification of a high-resolution coupled hydrodynamic-ecosystem coastal-ocean model: Part 2. Chlorophyll-a nutrients and SPM. Journal of Marine Systems, 68. 381 - 404. 10.1016/j.jmarsys.2007.01.005

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Allen, JI; Clarke, KR. 2007 Effects of demersal trawling on ecosystem functioning in the North Sea: a modelling study. Marine Ecology Progress Series, 336. 63 - 75. 10.3354/meps336063

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Dagnino, A; Allen, JI; Moore, MN; Viarengo, A. 2007 Development of an expert system for the integration of biomarker responses in mussels into an animal health index. Biomarkers, 12. 155 - 172. 10.1080/13547500601037171

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Siddorn, JR; Allen, JI; Blackford, JC; Gilbert, FJH; Holt, JT; Holt, M; Osbourne, J; Proctor, R; Mills, DK. 2007 Modelling the hydrodynamics and ecosystem of the North-West European continental shelf for operational oceanography. Journal of Marine Systems, 65. 417 - 429. 10.1016/j.jmarsys.2006.01.018

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Polimene, L; Zavatarelli, M; Allen, JI. 2007 A numerical simulation study of dissolved organic carbon accumulation in the northern Adriatic Sea. Journal of Geophysical Research-Oceans, 112 (C (Art. N). 10.1029/2006JC003529

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Blackford, JC; Allen, JI; de Young, B. 2007 Advances in marine ecosystem modelling research. Journal of Marine Systems, 64. 01-Feb. 10.1016/j.jmarsys.2006.05.001

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Moore, MN; Lowe, DM; Allen, JI; McVeigh, A; Somerfield, PJ. 2007 Predicting health of the environment - lysosomal biomarker responses in mussels. In: Proceedings of the Workshop on the Med Pol Biological Effects Programme: Acheivements and Future Orientations Alessandria Italy 20 - 21 December 2006. MAP Technical Reports Series No 166 United Nations Environment Programme/Mediterranean Action Plan (UNEP/MAP) Athens greece. Mar-20.

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Allen, JI; Somerfield, PJ; Gilbert, FJH. 2007 Quantifying uncertainty in high-resolution coupled hydrodynamic-ecosystem models. Journal of Marine Systems, 64. Mar-14. 10.1016/j.jmarsys.2006.02.010

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Lewis, K; Allen, JI; Richardson, AJ; Holt, JT. 2006 Error quantification of a high resolution coupled hydrodynamic-ecosystem coastal-ocean model: Part3 validation with Continuous Plankton Recorder data. Journal of Marine Systems, 63 (3 - 4). 209 - 224. 10.1016/j.jmarsys.2006.08.001

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Moore, MN; Allen, JI; Somerfield, PJ. 2006 Autophagy: Role in surviving environmental stress. Marine Environmental Research, 62 Sup. S420 - S425. 10.1016/j.marenvres.2006.04.055

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Allen, JI; Archer, SD; Gilbert, FJH; Blackford, JC; Taylor, AH. 2006 Changes in DMS production and flux in relation to decadal shifts in ocean circulation. Tellus Series B-Chemical and Physical Meteorology, 58B. 242 - 254. 10.1111/j.1600-0889.2006.00183.x

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McVeigh, A; Moore, MN; Allen, JI; Dyke, P. 2006 Lysosomal responses to nutritional and contaminant stress in mussel hepatopancreatic digestive cells: A modelling study. Marine Environmental Research, 62 Sup. S433 - S438. 10.1016/j.marenvres.2006.04.021

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Moore, MN; Allen, JI; McVeigh, A; Shaw, JP. 2006 Lysosomal and autophagic reactions as predictive indicators of environmental impact in aquatic animals. Autophagy, 2. 217 - 220.

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Torres, R; Allen, JI; Figueiras, FG. 2006 Sequential data assimilation in an upwelling influenced estuary. Journal of Marine Systems. 0 - 0. 10.1016/j.jmarsys.2006.02.001

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Moore, MN; Allen, JI; McVeigh, A. 2006 Environmental prognostics: An integrated model supporting lysosomal stress responses as predictive biomarkers of animal health status. Marine Environmental Research, 61. 278 - 304. 10.1016/j.marenvres.2005.10.005

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Hardman-Mountford, NJ; Allen, JI; Frost, MT; Hawkins, SJ; Kendall, MA; Mieszkowska, N; Richardson, K; Somerfield, PJ. 2005 Diagnostic monitoring of a changing environment: An alternative UK perspective. Marine Pollution Bulletin, 50. 1463 - 1471. 10.1016/j.marpolbul.2005.06.022

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Holt, JT; Allen, JI; Proctor, R; Gilbert, FJH. 2005 Error quantification of a high-resolution coupled hydrodynamic-ecosystem coastal-ocean model: Part 1 model overview and assessment of the hydrodynamics. Journal of Marine Systems, 57. 167 - 188. 10.1016/j.jmarsys.2005.04.008

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Blackford, JC; Allen, JI; Gilbert, FJH. 2004 Ecosystem dynamics at six contrasting sites: a generic modelling study. Journal of Marine Systems, 52 (1 - 4). 191 - 215. 10.1016/j.jmarsys.2004.02.004

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Allen, JI; McVeigh, A. 2004 Towards computational models of cells for environmental toxicology. Journal of Molecular Histology, 35(7). 697 - 706.

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Allen, JI; Moore, MN. 2004 Environmental prognostics: Is the current use of biomarkers appropriate for environmental risk evaluation?. Marine Environmental Research, 58 (2-5). 227 - 232. 10.1016/j.marenvres.2004.03.119

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Moore, MN; Allen, JI; McVeigh, A. 2004 Ecophysiomics: a systems biology approach to environmental toxico-pathology from the molecular and cellular levels to the ecosystem.. Journal of Histochemistry & Cytochemistry. 12 - 12.

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Zubkov, MV; Allen, JI; Fuchs, BM. 2004 Coexistence of dominant groups in marine bacterioplankton community - a combination of experimental and modelling approaches. Journal of the Marine Biological Association of the United Kingdom, 84. 519 - 529. 10.1017/S002531540400952Xh

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Allen, JI; Blackford, JC; Gilbert, FJH; Siddorn, JR. 2004 Turbulence as a control on the microbial loop in a temperate seasonally stratified marine systems model. Journal of Sea Research, 52. 1 - 20. 10.1016/j.seares.2003.09.004

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Holt, JT; Proctor, R; Blackford, JC; Allen, JI; Ashworth, M. 2004 Advective controls on primary production in the stratified western Irish Sea: An eddy-resolving model study. Journal of Geophysical Research-Oceans, 109 C5. 5024 - 5034. 10.1029/2003JC001951

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Archer, SD; Gilbert, FJH; Allen, JI; Blackford, JC; Nightingale, PD. 2004 Modelling of the seasonal patterns of dimethylsulphide production and fate during 1989 at a site in the North Sea. Canadian Journal of Fisheries and Aquatic Sciences, 61. 765 - 787. 10.1139/F04-028

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McVeigh, A; Allen, JI; Moore, MN; Dyke, P; Noble, D. 2004 A carbon and nitrogen flux model of mussel digestive gland epithelial cells and their simulated response to pollutants. Marine Environmental Research, 58. 821 - 827. 10.1016/j.marenvres.2004.03.099

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Proctor, R; Holt, JT; Allen, JI; Blackford, JC. 2003 Nutrient fluxes and budgets for the North West European Shelf from a three-dimensional model. Science of the Total Environment, 314. 769 - 785. 10.1016/S0048-9697(03)00083-4

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Siddorn, JR; Allen, JI; Uncles, RJ. 2003 Heat salt and tracer transport in the Plymouth Sound coastal region: a 3-D modelling study. Journal of the Marine Biological Association of the United Kingdom, 83 (4). 673 - 682. 10.1017/S002531540300763Xh

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Triantafyllou, G; Petihakis, G; Allen, JI. 2003 Assessing the performance of the Cretan Sea ecosystem model with the use of high frequency M3A buoy data set. Annales Geophysicae, 21 (1). 365 - 375.

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Allen, JI; Eknes, M; Evensen, G. 2003 An Ensemble Kalman Filter with a complex marine ecosystem model: hindcasting phytoplankton in the Cretan Sea. Annales Geophysicae, 21 (1). 399 - 411.

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Siddorn, JR; Allen, JI. 2003 Surface heat fluxes and ecosystem function in the Cretan Sea (eastern Mediterranean): a modelling study. Annales Geophysicae, 21 (1). 377 - 388.

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Hoteit, I; Triantafyllou, G; Petihakis, G; Allen, JI. 2003 A singular evolutive extended Kalman filter to assimilate real in situ data in a 1-D marine ecosystem model. Annales Geophysicae, 21 (1). 389 - 397.

Item not available from this repository.

Moore, MN; Allen, JI. 2002 A computational model of the digestive gland epithelial cell of marine mussels and its simulated responses to oil-derived aromatic hydrocarbons. Marine Environmental Research, 54 (03-May). 579 - 584. 10.1016/S0141-1136(02)00166-6

Item not available from this repository.

Allen, JI; Somerfield, PJ; Siddorn, JR. 2002 Primary and bacterial production in the Mediterranean Sea: a modelling study. Journal of Marine Systems, 33. 473 - 495. 10.1016/S0924-7963(02)00072-6

Item not available from this repository.

Taylor, AH; Allen, JI; Clark, PA. 2002 Extraction of a weak climatic signal by an ecosystem. Nature, 416 (6881). 629 - 632. 10.1038/416629a

Item not available from this repository.

Allen, JI; Blackford, JC; Holt, JT; Proctor, R; Ashworth, M; Siddorn, JR. 2001 A highly spatially resolved ecosystem model for the North West European Continental Shelf. Sarsia, 86 (6). 423 - 440.

Item not available from this repository.

Crise, A; Allen, JI; Baretta, J; Crispi, G; Mosetti, R; Solidoro, C. 1999 The Mediterranean pelagic ecosystem response to physical forcing. Progress in Oceanography, 44 (01-Mar). 219 - 243. 10.1016/S0079-6611(99)00027-0

Item not available from this repository.

Allen, JI; Blackford, JC; Radford, PJ. 1998 An 1-D vertically resolved modelling study of the ecosystem dynamics of the middle and southern Adriatic Sea. Journal of Marine Systems, 18 (01-Mar). 265 - 286. 10.1016/S0924-7963(98)00015-3

Item not available from this repository.

Allen, JI; Howland, RMH; Bloomer, NJ; Uncles, RJ. 1998 Simulating the spring phytoplankton bloom in the Humber plume UK. Marine Pollution Bulletin, 37 (03-Jul). 295 - 305.

Item not available from this repository.

Allen, JI. 1997 A modelling study of ecosystem dynamics and nutrient cycling in the Humber plume UK. Journal of Sea Research, 38 (03-Apr). 333 - 359. 10.1016/S1385-1101(97)00050-6

Item not available from this repository.

Millward, GE; Kitts, HJ; Ebdon, L; Allen, JI; Morris, AW. 1997 Arsenic in the Thames Plume UK. Marine Environmental Research, 44 (1). 51 - 67. 10.1016/S0141-1136(96)00102-X

Item not available from this repository.

Millward, GE; Allen, JI; Morris, AW; Turner, A. 1996 Distributions and fluxes of non-detrital particulate FeMnCuZn in the Humber coastal zone UK. Continental Shelf Research, 16 (7). 967 - 993. 10.1016/0278-4343(95)00040-2

Item not available from this repository.

Morris, AW; Allen, JI; Howland, RJM; Wood, RG. 1995 The Estuary Plume Zone - Source Or Sink For Land-Derived Nutrient Discharges. Estuarine, Coastal and Shelf Science, 40 (4). 387 - 402. 10.1006/ecss.1995.0027

Item not available from this repository.

Huthnance, JM; Allen, JI; Davies, AM; Hydes, DJ; James, ID; Jones, JE; Millward, GE; Prandle, D; Proctor, R; Purdie, DA; Statham, PJ; Tett, PB; Thomson, S; Wood, RG. 1993 Towards Water-Quality Models. Philosophical Transactions of the Royal Society of London Series A-Mathematical Physical and Engineering Sciences, 343 (1669). 569 - 584. 10.1098/rsta.1993.0067

Item not available from this repository.

Publication - Book

Allen, JI. 2011 Marine Environment & Human Health: An Overview. UNSPECIFIED, 0 - 0.

Item not available from this repository.

Publication - Conference Item

Cazenave, PW; Torres, R; Allen, JI. 2016 Offshore Wind Farm Impacts on Seasonally Stratified Seas: An Unstructured Modelling Approach. [Lecture] In: Challenger Coastal Special Interest Group. Met Office. (Unpublished)

Item availability may be restricted.

Cazenave, PW; Torres, R; Allen, JI. 2016 Offshore Wind Farm Impacts on Seasonally Stratified Seas: An Unstructured Modelling Approach. [Lecture] In: Challenger Meeting 2016. National Oceanography Centre, Liverpool. (Unpublished)

Item availability may be restricted.

Bruggeman, J; Torres, R; Cazenave, P; Artioli, Y; Allen, JI. 2016 Coupling FVCOM with FABM - Multiplying the Choice of Marine Ecosystem Models within FVCOM. [Lecture] In: UK FVCOM Workshop. National Oceanography Centre, Liverpool. (Unpublished)

Item availability may be restricted.

Cazenave, P; Allen, JI; Blackford, JC; Artioli, Y; Torres, R; Hawkins, AJS; Morris, K. 2015 Risks and Opportunities for Sustainable Aquaculture. [Poster] In: Aquaculture 2015, Montpellier, France, 24th-26th August 2015.

Cazenave, P; Torres, R; Allen, JI. 2015 Offshore wind farm impacts on seasonally stratified seas: an unstructured modelling approach. [Lecture] In: Partnership for Research in Marine Renewable Energy, Univesity of Exeter, Falmouth Campus, 2015/06/16. (Unpublished)

Item availability may be restricted.

Cazenave, P; Torres, R; Allen, JI. 2015 Offshore wind farm impacts on seasonally stratified seas: an unstructured modelling approach. [Lecture] In: PML Seminar Series, Plymouth Marine Laboratory, 2014/04/08. (Unpublished)

Item availability may be restricted.

Cazenave, P; Torres, R; Allen, JI. 2014 Offshore renewable energy device impacts on seasonally stratified seas around the UK: an unstructured modelling approach. [Lecture] In: National Oceanography Centre, Liverpool, Seminar Series, National Oceanography Centre, Liverpool, 2014/12/10. (Unpublished)

Item availability may be restricted.

Cazenave, P; Torres, R; Allen, JI. 2014 Offshore renewable energy device impacts on seasonally stratified seas around the UK: an unstructured modelling approach. [Lecture] In: 5th FVCOM Workshop, SAMS, Oban, Scotland, 2014/11/17. (Unpublished)

Item availability may be restricted.

Cazenave, P; Torres, R; Allen, JI. 2014 Offshore renewable energy device impacts on seasonally stratified seas around the UK: an unstructured modelling approach. [Lecture] In: Partnership for Research in Marine Renewable Energy (PRIMaRE), University of Plymouth, 2014/06/04. (Unpublished)

Item availability may be restricted.

Cazenave, P; Torres, R; Allen, JI. 2014 Offshore renewable energy device impacts on seasonally stratified seas around the UK: an unstructured modelling approach. [Poster] In: Partnership for Research in Marine Renewable Energy. (Unpublished)

Item availability may be restricted.

Cazenave, P; Torres, R; Allen, JI. 2014 Modelling the coastal and nearshore zones with the FVCOM unstructured model. [Lecture] In: Memori Workshop, Seoul, Korea, 2014/03/18. (Unpublished)

Item availability may be restricted.

Allen, JI; Blackford, JC; Cheung, W; Fulton, EA. 2013 Overview of the third Advances in Marine Ecosystem Modelling Research (AMEMR) Symposium, 27–30 June 2011, Plymouth. [Other] In: Advances in Marine Ecosystem Modelling Research (AMEMR) Symposium, Plymouth, 27 - 30 June 2011. 1-2.

Item not available from this repository.

Allen, JI. 2002 Simulating the spring phytoplankton bloom in the Humber Plume (UK) with a variable phytoplankton carbon: chlorophyll-a model.. In: 2nd International EuroGOOS Conference, ROME, ITALY, MAR 11-13, 1999. ELSEVIER SCIENCE BV, 497 - 504.

Item not available from this repository.

Allen, JI. 1997 The importance of high frequency data in ecological modelling.. In: 1st International Conference on EuroGOOS - Operational Oceanography: The Challenge for European Co-Operation, THE HAGUE, NETHERLANDS, OCT 07-11, 1996. ELSEVIER OCEANOGRAPHY SERIES, 499 - 506.

Item not available from this repository.

This list was generated on Sat Nov 18 11:50:11 2017 UTC.