Browse by PML Authors

Ciavatta, S, Lazzari, P, Álvarez, E, Bertino, L, Bolding, K, Bruggeman, J, Capet, A, Cossarini, G, Daryabor, F, Nerger, L, Popov, M, Skákala, J, Spada, S, Teruzzi, A, Wakamatsu, T, Yumruktepe, VC and Brasseur, P 2024 Control of simulated ocean ecosystem indicators by biogeochemical observations. Progress in Oceanography. 103384. https://doi.org/10.1016/j.pocean.2024.103384 (In Press)

Skákala, J, Ford, D, Fowler, A, Lea, D, Martin, M and Ciavatta, S 2024 How uncertain and observable are marine ecosystem indicators in shelf seas?. Progress in Oceanography, 224. 103249. https://doi.org/10.1016/j.pocean.2024.103249

Wilson, RJ, Kay, S and Ciavatta, S 2024 Partitioning climate uncertainty in ecological projections: Pacific oysters in a hotter Europe. Ecological Informatics, 80. 102537. https://doi.org/10.1016/j.ecoinf.2024.102537

Bruggeman, J, Bolding, K, Nerger, L, Teruzzi, A, Spada, S, Skákala, J and Ciavatta, S 2024 EAT v0.9.6: a 1D testbed for physical-biogeochemical data assimilation in natural waters. https://doi.org/10.5194/gmd-2023-238 (In Press)

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Sathyendranath, S, Brewin, RJW, Ciavatta, S, Jackson, T, Kulk, G, Jonsson, B, Martinez Vicente, V and Platt, T 2023 Ocean Biology Studied from Space. Surveys in Geophysics, 44 (5). 1287-1308. https://doi.org/10.1007/s10712-023-09805-9

Ford, DA, Grossberg, S, Rinaldi, G, Menon, PP, Palmer, MR, Skákala, J, Smyth, TJ, Williams, CAJ, Lorenzo Lopez, A and Ciavatta, S 2022 A solution for autonomous, adaptive monitoring of coastal ocean ecosystems: Integrating ocean robots and operational forecasts. Frontiers in Marine Science, 9. https://doi.org/10.3389/fmars.2022.1067174

Shu, C, Xiu, P, Xing, X, Qiu, G, Ma, W, Brewin, RJW and Ciavatta, S 2022 Biogeochemical Model Optimization by Using Satellite-Derived Phytoplankton Functional Type Data and BGC-Argo Observations in the Northern South China Sea. Remote Sensing, 14 (5). 1297. https://doi.org/10.3390/rs14051297

Skákala, J, Bruggeman, J, Ford, D, Wakelin, S, Akpınar, A, Hull, T, Kaiser, J, Loveday, BR, O’Dea, E, Williams, CAJ and Ciavatta, S 2022 The impact of ocean biogeochemistry on physics and its consequences for modelling shelf seas. Ocean Modelling, 172. 101976. https://doi.org/10.1016/j.ocemod.2022.101976

Baatz, R, Hendricks Franssen, HJ, Euskirchen, E, Sihi, D, Dietze, M, Ciavatta, S, Fennel, K, Beck, H, De Lannoy, G, Pauwels, VRN, Raiho, A, Montzka, C, Williams, M, Mishra, U, Poppe, C, Zacharias, S, Lausch, A, Samaniego, L, Van Looy, K, Bogena, H, Adamescu, M, Mirtl, M, Fox, A, Goergen, K, Naz, BS, Zeng, Y and Vereecken, H 2021 Reanalysis in Earth System Science: Toward Terrestrial Ecosystem Reanalysis. Reviews of Geophysics, 59 (3). https://doi.org/10.1029/2020RG000715

Brewin, RJW, Sathyendranath, S, Platt, T, Bouman, H, Ciavatta, S, Dall'Olmo, G, Dingle, J, Groom, SB, Jonsson, B, Kostadinov, TS, Kulk, G, Laine, M, Martinez-Vicente, V, Psarra, S, Raitsos, DE, Richardson, K, Rio, MH, Rousseaux, CS, Salisbury, J, Shutler, JD and Walker, P 2021 Sensing the ocean biological carbon pump from space: A review of capabilities, concepts, research gaps and future developments. Earth-Science Reviews, 217. 103604. https://doi.org/10.1016/j.earscirev.2021.103604

Skákala, J, Ford, D, Bruggeman, J, Hull, T, Kaiser, J, King, RR, Loveday, BR, Palmer, MR, Smyth, TJ, Williams, CAJ and Ciavatta, S 2021 Towards a multi‐platform assimilative system for North Sea biogeochemistry. Journal of Geophysical Research: Oceans. https://doi.org/10.1029/2020JC016649

Palmer, SCJ, Barillé, L, Kay, S, Ciavatta, S, Buck, B and Gernez, PM 2020 Pacific oyster (Crassostrea gigas) growth modelling and indicators for offshore aquaculture in Europe under climate change uncertainty. Aquaculture, 532. 736116. https://doi.org/10.1016/j.aquaculture.2020.736116

Torres, R, Artioli, Y, Kitidis, V, Ciavatta, S, Ruiz-Villarreal, M, Shutler, J, Polimene, L, Martinez Vicente, V, Widdicombe, CE, Woodward, EMS, Smyth, TJ, Fishwick, J and Tilstone, GH 2020 Sensitivity of Modeled CO2 Air–Sea Flux in a Coastal Environment to Surface Temperature Gradients, Surfactants, and Satellite Data Assimilation. Remote Sensing, 12 (12). 2038. https://doi.org/10.3390/rs12122038

Skakala, J, Bruggeman, J, Brewin, RJW, Ford, D and Ciavatta, S 2020 Improved representation of underwater light field and its impact on ecosystem dynamics: a study in the North Sea. Journal of Geophysical Research: Oceans. 1, pp. https://doi.org/10.1029/2020JC016122 (In Press)

Ciavatta, S, Kay, S, Brewin, RJW, Cox, R., Di Cicco, A, Nencioli, F, Polimene, L, Sammartino, M, Santoleri, R, Skakala, J and Tsapakis, M. 2019 Ecoregions in the Mediterranean Sea Through the Reanalysis of Phytoplankton Functional Types and Carbon Fluxes. Journal of Geophysical Research: Oceans, 124 (10). 6737-6759. https://doi.org/10.1029/2019JC015128

Groom, SB, Sathyendranath, S, Ban, Y, Bernard, S, Brewin, RJW, Brotas, V, Brockmann, C, Chauhan, P, Choi, J-K, Chuprin, A, Ciavatta, S, Cipollini, P, Donlon, CJ, Franz, BA, He, X, Hirata, T, Jackson, T, Kampel, M, Krasemann, H, Lavender, SJ, Pardo-Martinez, S, Melin, F, Platt, T, Santoleri, R, Skákala, J, Schaeffer, B, Smith, M, Steinmetz, F, Valente, A and Wang, M 2019 Satellite Ocean Colour: Current Status and Future Perspective. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00485

Fennel, K, Gehlen, M, Brasseur, P, Brown, CW, Ciavatta, S, Cossarini, G, Crise, A, Edwards, CA, Ford, D, Friedrichs, MAM, Gregoire, M, Jones, E, Kim, H-C, Lamouroux, J, Murtugudde, R and Perruche, C 2019 Advancing Marine Biogeochemical and Ecosystem Reanalyses and Forecasts as Tools for Monitoring and Managing Ecosystem Health. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00089

Moore, AM, Martin, MJ, Akella, S, Arango, HG, Balmaseda, M, Bertino, L, Ciavatta, S, Cornuelle, B, Cummings, J, Frolov, S, Lermusiaux, P, Oddo, P, Oke, PR, Storto, A, Teruzzi, A, Vidard, A and Weaver, AT 2019 Synthesis of Ocean Observations Using Data Assimilation for Operational, Real-Time and Reanalysis Systems: A More Complete Picture of the State of the Ocean. Frontiers in Marine Science, 6. https://doi.org/10.3389/fmars.2019.00090

Leles, SG, Polimene, L, Bruggeman, J, Blackford, JC, Ciavatta, S, Mitra, A and Flynn, KJ 2018 Modelling mixotrophic functional diversity and implications for ecosystem function. Journal Of Plankton Research. https://doi.org/10.1093/plankt/fby044

Skákala, J, Ford, D, Brewin, RJW, McEwan, R, Kay, S, Taylor, BH, de Mora, L and Ciavatta, S 2018 The Assimilation of Phytoplankton Functional Types for Operational Forecasting in the Northwest European Shelf. Journal of Geophysical Research-Oceans. https://doi.org/10.1029/2018JC014153

Sankar, S, Polimene, L, Marin, L, Menon, NN, Samuelsen, A, Pastres, R and Ciavatta, S 2018 Sensitivity of the simulated Oxygen Minimum Zone to biogeochemical processes at an oligotrophic site in the Arabian Sea. Ecological Modelling, 372. 12-23. https://doi.org/10.1016/j.ecolmodel.2018.01.016

Ciavatta, S, Brewin, RJW, Skákala, J, Polimene, L, Artioli, Y, Allen, JI and de Mora, L 2018 Assimilation of ocean-colour plankton functional types to improve marine ecosystem simulations. Journal of Geophysical Research-Oceans. https://doi.org/10.1002/2017JC013490

Brewin, RJW, Ciavatta, S, Sathyendranath, S, Jackson, T, Tilstone, GH, Curran, K, Airs, RL, Cummings, DG, Brotas, V, Organelli, E, Dall’Olmo, G and Raitsos, DE 2017 Uncertainty in ocean-colour estimates of chlorophyll for phytoplankton groups. Frontiers in Marine Science, 4 (104). https://doi.org/10.3389/fmars.2017.00104

Queiros, AM, Strong, JA, Mazik, K, Carstensen, J, Bruun, JT, Somerfield, PJ, Bruhn, A, Ciavatta, S, Flo, E, Bizsel, N, Ozaydinli, M, Chuseve, R, Muxica, I, Nygard, H, Papadopoulou, N, Pantazi, M and Krause-Jensen, D 2016 An Objective Framework to Test the Quality of Candidate Indicators of Good Environmental Status [in special issue: Bridging the Gap Between Policy and Science in Assessing the Health Status of Marine Ecosystems] Frontiers in Marine Science, 3, 73. 15, pp. https://doi.org/10.3389/fmars.2016.00073

Ciavatta, S, Kay, S, Saux Picart, S, Butenschon, M and Allen, JI 2016 Decadal reanalysis of biogeochemical indicators and fluxes in the North West European shelf-sea ecosystem. Journal of Geophysical Research-Oceans, 121 (4). 1824-1845. https://doi.org/10.1002/2015JC011496

Butenschon, M, Clark, JR, Aldridge, JN, Allen, JI, Artioli, Y, Blackford, JC, Bruggeman, J, Cazenave, P, Ciavatta, S, Kay, S, Lessin, G, van Leeuwen, S, Van der Molen, J, de Mora, L, Polimene, L, Sailley, SF, Stephens, N and Torres, R 2016 ERSEM 15.06: a generic model for marine biogeochemistry and the ecosystem dynamics of the lower trophic levels. Geoscientific Model Development, 9 (4). 1293-1339. https://doi.org/10.5194/gmd-9-1293-2016

Pinna, A, Pezzolesi, L, Pistocchi, R, Vanucci, S, Ciavatta, S and Polimene, L 2015 Modelling the Stoichiometric Regulation of C-Rich Toxins in Marine Dinoflagellates. PLoS one, 10 (9). https://doi.org/10.1371/journal.pone.0139046

Butenschon, M, Clark, JR, Aldridge, JN, Allen, JI, Artioli, Y, Blackford, JC, Bruggeman, J, Cazenave, P, Ciavatta, S, Kay, S, Lessin, G, van Leeuwen, S, Van der Molen, J, de Mora, L, Polimene, L, Sailley, SF, Stephens, N and Torres, R 2015 ERSEM 15.06: a generic model for marine biogeochemistry and the ecosystem dynamics of the lower trophic levels. Geoscientific Model Development Discussions, 8 (8). 7063-7187. https://doi.org/10.5194/gmdd-8-7063-2015

Polimene, L, Mitra, A, Sailley, SF, Ciavatta, S, Widdicombe, CE, Atkinson, A and Allen, JI 2015 Decrease in diatom palatability contributes to bloom formation in the Western English Channel. Progress in Oceanography, 137. 484-497. https://doi.org/10.1016/j.pocean.2015.04.026

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Ciavatta, S, Torres, R, Martinez-Vicente, V, Smyth, TJ, Dall’Olmo, G, Polimene, L and Allen, JI 2014 Assimilation of remotely-sensed optical properties to improve marine biogeochemistry modelling. Progress in Oceanography, 127. 74-95. https://doi.org/10.1016/j.pocean.2014.06.002

Lovato, T, Ciavatta, S, Brigolin, D, Rubino, A and Pastres, R 2013 Modelling dissolved oxygen and benthic algae dynamics in a coastal ecosystem by exploiting real-time monitoring data. Estuarine, Coastal and Shelf Science, 119. 17 - 30. https://doi.org/10.1016/j.ecss.2012.12.025

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Roy, S, Broomhead, DS, Platt, T, Sathyendranath, S and Ciavatta, S 2012 Sequential variations of phytoplankton growth and mortality in an NPZ model: A remote-sensing-based assessment. Journal of Marine Systems, 92. 16 - 29. https://doi.org/10.1016/j.jmarsys.2011.10.001

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Ciavatta, S, Torres, R, Saux-Picart, S and Allen, JI 2011 Can ocean color assimilation improve biogeochemical hindcasts in shelf seas?. Journal of Geophysical Research-Oceans, 116. Jan-19. https://doi.org/10.1029/2011JC007219

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Ciavatta, S and Pastres, R 2011 Exploring the long-term and interannual variability of biogeochemical variables in coastal areas by means of a data assimilation approach. Estuarine, Coastal and Shelf Science, 91. 411 - 422. https://doi.org/10.1016/j.ecss.2010.11.006

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Solidoro, C, Bandelj, V, Bernardi, FA, Camatti, E, Ciavatta, S, Cossarini, G, Facca, C, Franzoi, P, Libralato, S, Melaku Canu, D, Pastres, R, Pranovi, F, Raicevich, S, Socal, G, Sfriso, A, Sigovini, M, Tagliapietra, D and Torricelli, P 2010 Response of the Venice lagoon ecosystem to natural and anthropogenic pressures over the last 50 years. UNSPECIFIED, 483 - 511.

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