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Twyford, AD, Azzopardi, F, Cunliffe, M, Uhl, R, Beasley, J, Barnes, I, Allen, H and Bell, D 2024 A DNA barcoding framework for taxonomic verification in the Darwin Tree of Life Project. Wellcome Open Research, 9 (339). https://doi.org/10.12688/wellcomeopenres.21143.1
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Diver, P, Ward, BA and Cunliffe, M 2024 Physiological and morphological plasticity in response to nitrogen availability of a yeast widely distributed in the open ocean. FEMS Microbiology Ecology. https://doi.org/10.1093/femsec/fiae053
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Peng, X, Amend, AS, Baltar, F, Blanco-Bercial, L, Breyer, E, Burgaud, G, Cunliffe, M, Edgcomb, V, Grossart, H-P and Mara, P 2024 Planktonic marine fungi: A review. JGR Biogeosciences, 129 (3). 32, pp. https://doi.org/10.1029/2023JG007887
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Chrismas, N, Bird, K, Laundon, D, Hesketh-Best, P, Lieng, C and Cunliffe, M 2024 Evolutionary and biological mechanisms underpinning chitin degradation in aquatic fungi. bioRxiv. https://doi.org/10.1101/2024.02.10.579206
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Branscombe, L, Harrison, EL, Zhi Yi, DC, Swink, C, Keys, M, Widdicombe, C, Wilson, WH, Cunliffe, M and Helliwell, KE 2023 Cryptic bacterial pathogens of diatoms peak during senescence of a winter diatom bloom. New Phytologist. https://doi.org/10.1111/nph.19441
Branscombe, L, Harrison, EL, Choong, ZYD, Swink, C, Keys, M, Widdicombe, CE, Wilson, WH, Cunliffe, M and Helliwell, KE 2023 Cryptic bacterial pathogens of diatoms peak during senescence of a winter diatom bloom. New Phytologist, 241 (3). 1292-1307. https://doi.org/10.1111/nph.19441
Chrismas, N, Tindall-Jones, B, Jenkins, HL, Harley, J, Bird, KE and Cunliffe, M 2023 Metatranscriptomics reveals diversity of symbiotic interaction and mechanisms of carbon exchange in the marine cyanolichen Lichina pygmaea. New Phytologist. doi.org/10.1111/nph.19320
Allen, R, Bird, KE, Murrell, JC and Cunliffe, M 2023 Latitudinal variation in the potential activity of Atlantic Ocean bacterioplankton revealed through 16S rRNA and 16S rRNA gene metabarcoding. Frontiers in Marine Science, 10.
Santi, I, Beluche, O, Beraud, M, Buttigieg, Pier Luigi, Casotti, R, Cox, CJ, Cunliffe, M, Davies, N, de Cerio, OD and Exter, K 2023 European marine omics biodiversity observation network: a strategic outline for the implementation of omics approaches in ocean observation. Frontiers in Marine Science, 10. https://doi.org/10.3389/fmars.2023.1118120
Tindall-Jones, B, Cunliffe, M and Chrismas, N 2023 Lichen zonation on UK rocky seashores: a trait-based approach to delineating marine and maritime lic. The Lichenologist, 55 (2). 91-99. https://doi.org/10.1017/S0024282923000038
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Chrismas, N, Allen, R, Allen, MJ, Bird, K and Cunliffe, M 2023 A 17-year time-series of fungal environmental DNA from a coastal marine ecosystem reveals long-term seasonal-scale and inter-annual diversity patterns. Proceedings of the National Academy of Sciences, 290 (1992).
Cunliffe, M, Mock, T, Boulton, W, Balmonte, J-P, Barry, K, Bertilsson, S, Bowman, JC, Buck, M, Bratbak, G and Chamberlain, EJ 2022 Multiomics in the central Arctic Ocean for benchmarking biodiversity change. PLoS Biology.
Cunliffe, M 2022 Who are the marine fungi?. Environmental Microbiology, 25 (1). 131-134. https://doi.org/10.1111/1462-2920.16240
Abreu, A, Bourgois, E, Gristwood, A, Trouble, R, Acinas, SG, Bork, P, Boss, E, Bowler, C, Budinich, M, Chaffrom, S, de Vargas, C, Delmont, TO, Eveillard, D, Guidi, L, Ludicone, D, Kandels, S, Morlon, H, Lombard, F, Pepperkok, R, Karlusich, JJP, Piganeau, G, Regimbeau, A, Sommeria-Klein, G, Stemmann, L, Sullivan, MB, Sunagawa, S, Wincker, P, Zablocki, O, Arendt, D, Bilic, J, Finn, R, Heard, E, Rouse, B, Vamathevan, J, Casotti, R, Cancio, I, Cunliffe, M, Kervella, AE, Kooistra, WHCF, Obst, M, Pade, N, Power, DM, Santi, I, Tsagaraki, TM and Vanaverbeke, J 2022 Priorities for ocean microbiome research. Nature Microbiology, 7 (7). 937-947. https://doi.org/10.1038/s41564-022-01145-5
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Bonthond, G, Barilo, A, Allen, RJ, Cunliffe, M and Krueger-Hadfield, SA 2022 Fungal endophytes vary by species, tissue type and life cycle stage in intertidal macroalgae. Journal of Phycology. https://doi.org/10.1111/jpy.13237
Thomas, S, Lengger, SK, Bird, KE, Allen, R and Cunliffe, M 2022 Macromolecular composition and substrate range of three marine fungi across major cell types. FEMS Microbes, 3, xtab019. https://doi.org/10.1093/femsmc/xtab019
Mieszkowska, N, Wilson, WH, Jenkins, HL, Mrowicki, R, Cunliffe, M, Adkins, P, Lonsdale, P, Harley, J, Bishop, JDD, Warring, S and Blaxter, ML 2022 Sequence locally, think globally: The Darwin Tree of Life Project. Proceedings of the National Academy of Sciences, 119 (4), e211564211. https://doi.org/10.1073/pnas.2115642118
Zäncker, B, Cunliffe, M and Engel, A 2021 Eukaryotic community composition in the sea surface microlayer across an east–west transect in the Mediterranean Sea. Biogeosciences, 18. 2107-2118. https://doi.org/10.5194/bg-18-2107-2021
Laundon, D, Mock, T, Wheeler, G and Cunliffe, M 2021 Healthy herds in the phytoplankton: the benefit of selective parasitism. International Society for Microbial Ecology, 15. 2163-2166. https://doi.org/10.1038/s41396-021-00936-8
Roberts, C, Allen, R, Bird, KE and Cunliffe, M 2020 Chytrid fungi shape bacterial communities on model particulate organic matter. Biology Letters, 16, 20200368. https://doi.org/10.1098/rsbl.2020.0368
Zäncker, B, Stern, RF, Price, EL and Cunliffe, M 2020 Reduce, Reuse, Recycle in the Arctic Ocean With the Power of Microbes. Frontiers for Young Minds, 8 (90). https://doi.org/10.3389/frym.2020.00090
Laundon, D, Chrismas, N, Wheeler, G and Cunliffe, M 2020 Chytrid rhizoid morphogenesis resembles hyphal development in multicellular fungi and is adaptive to resource availability. Proceedings of the Royal Society B: Biological Sciences, 287 (1928). https://doi.org/10.1098/rspb.2020.0433
Chrismas, N and Cunliffe, M 2020 Depth-dependent mycoplankton glycoside hydrolase gene activity in the open ocean—evidence from the Tara Oceans eukaryote metatranscriptomes. International Society of Microbial Ecology, 14. 2361-2365. https://doi.org/10.1038/s41396-020-0687-2
Zäncker, B, Engel, A and Cunliffe, M 2019 Bacterial communities associated with individual transparent exopolymer particles (TEP). Journal of Plankton Research, 41 (4). 561-565. https://doi.org/10.1093/plankt/fbz022
Dale, H, Solan, M, Lam, P and Cunliffe, M 2019 Sediment microbial assemblage structure is modified by marine polychaete gut passage. FEMS Microbiology Ecology, 95 (5). https://doi.org/10.1093/femsec/fiz047
Zäncker, B, Cunliffe, M and Engel, A 2018 Bacterial Community Composition in the Sea Surface Microlayer Off the Peruvian Coast. Frontiers in Microbiology, 9. https://doi.org/10.3389/fmicb.2018.02699
Cronin-O’Reilly, S, Taylor, JD, Jermyn, I, Allcock, AL, Cunliffe, M and Johnson, MP 2018 Limited congruence exhibited across microbial, meiofaunal and macrofaunal benthic assemblages in a heterogeneous coastal environment. Scientific Reports, 8 (1). https://doi.org/10.1038/s41598-018-33799-9
Taylor, JD, Bird, KE, Widdicome, CE and Cunliffe, M 2018 Active bacterioplankton community response to dissolved ‘free’ deoxyribonucleic acid (dDNA) in surface coastal marine waters. FEMS Microbiology Ecology, 94 (10). https://doi.org/10.1093/femsec/fiy132
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Wurl, O, Bird, K, Cunliffe, M, Landing, WM, Miller, U, Mustaffa, NIH, Ribas-Ribas, M, Witte, C and Zappa, CJ 2018 Warming and Inhibition of Salinization at the Ocean's Surface by Cyanobacteria. Geophysical Research Letters. https://doi.org/10.1029/2018GL077946
Cunliffe, M, Hollingsworth, A, Bain, C, Sharma, V and Taylor, JD 2017 Algal polysaccharide utilisation by saprotrophic planktonic marine fungi. Fungal Ecology, 30. 135-138. https://doi.org/10.1016/j.funeco.2017.08.009
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Smale, DA, Taylor, JD, Coombs, SH, Moore, GF and Cunliffe, M 2017 Community responses to seawater warming are conserved across diverse biological groupings and taxonomic resolutions. Proceedings of the Royal Society B: Biological Sciences, 284 (1862). 20170534. https://doi.org/10.1098/rspb.2017.0534
Engel, A, Bange, HW, Cunliffe, M, Burrows, SM, Friedrichs, G, Galgani, L, Herrmann, H, Hertkorn, N, Johnson, M, Liss, PS, Quinn, PK, Schartau, M, Soloviev, A, Stolle, C, Upstill-Goddard, RC, van Pinxteren, M and Zäncker, B 2017 The Ocean's Vital Skin: Toward an Integrated Understanding of the Sea Surface Microlayer. Frontiers in Marine Science, 4. https://doi.org/10.3389/fmars.2017.00165
Taylor, JD and Cunliffe, M 2017 Coastal bacterioplankton community response to diatom-derived polysaccharide microgels. Environmental Microbiology Reports, 9 (2). 151-157. https://doi.org/10.1111/1758-2229.12513
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Taylor, JD and Cunliffe, M 2016 Multi-year assessment of coastal planktonic fungi reveals environmental drivers of diversity and abundance. The ISME Journal, 10 (9). 2118-2128. https://doi.org/10.1038/ismej.2016.24
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Cunliffe, M and King, GM 2015 Purine catabolic pathway revealed by transcriptomics in the model marine bacteriumRuegeria pomeroyiDSS-3. FEMS Microbiology Ecology, 92 (1). fiv150. https://doi.org/10.1093/femsec/fiv150
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Taylor, J D and Cunliffe, M 2015 Polychaete burrows harbour distinct microbial communities in oil-contaminated coastal sediments. Environmental Microbiology Reports. n/a-n/a. https://doi.org/10.1111/1758-2229.12292 (In Press)
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Taylor, J and Cunliffe, M 2014 High-throughput sequencing reveals neustonic and planktonic protist diversity in coastal waters. Journal of Phycology, 50. 960-965. https://doi.org/10.1111/jpy.12228
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Taylor, JD, Ellis, R, Milazzo, M, Hall-Spencer, JM and Cunliffe, M 2014 Intertidal epilithic bacteria diversity changes along a naturally occurring carbon dioxide and pH gradient. FEMS Microbiology Ecology, 89 (3). 670-678. https://doi.org/10.1111/1574-6941.12368
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Brodie, J, Williamson, CJ, Smale, DA, Kamenos, NAK, Mieszkowska, N, Santos, RS, Cunliffe, M, Steinke, M, Yesson, C, Anderson, KM, Asnaghi, V, Brownlee, C, Burdett, HL, Burrows, MT, Collins, S, Donohue, PJC, Harvey, B, Foggo, A, Noisette, F, Nunes, J, Ragazzola, F, Raven, JA, Schmidt, DN, Suggett, D, Teichberg, M and Hall-Spencer, JM 2014 The future of the northeast Atlantic benthic flora in a high CO2 world. Ecology and Evolution, 4 (13). 2787-2798. https://doi.org/10.1002/ece3.1105
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Kadar, E, Cunliffe, M, Fisher, A, Stolpe, B, Lead, J and Shi, Z 2014 Chemical interaction of atmospheric mineral dust-derived nanoparticles with natural seawater — EPS and sunlight-mediated changes. Science of The Total Environment, 468-46. 265-271. https://doi.org/10.1016/j.scitotenv.2013.08.059
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Taylor, JD, Cottingham, SD, Billinge, J and Cunliffe, M 2014 Seasonal microbial community dynamics correlate with phytoplankton-derived polysaccharides in surface coastal waters. The ISME Journal, 8 (1). 245-248. https://doi.org/10.1038/ismej.2013.178
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Cunliffe, M and Wurl, O 2014 Guide to Best Practices to Study the Ocean's Surface. Plymouth, Occasional publications of the Marine Biological Association of the United Kingdom.
Cunliffe, M and Wurl, O 2015 Sampling the Sea Surface Microlayer. In: McGenity, T; Timmis, K; Nogales, B, (eds.) Hydrocarbon and Lipid Microbiology Protocols. Springer.
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Cooper, EJ, Thomas, S, Ussher, SJ, Rush, D, Cunliffe, M and Lengger, S 2021 Marine fungi and the biological carbon pump-n a quest for novel biomarkers for key players in the carbon cycle. In: 30th International Meeting on Organic Geochemistry (IMOG 2021), Online, September 12-17, 2021. 30th International Meeting on Organic Geochemistry, European Association of Geoscientists & Engineers, 1-2.