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Agirbas, E, Martinez Vicente, V, Brewin, RJW, Racault, M-FLP and Llewellyn, CA 2015 Temporal changes in total and size-fractioned chlorophyll-a in surface waters of three provinces in the Atlantic Ocean (September to November) between 2003 and 2010. Journal of Marine Systems, 150. 56-65. https://doi.org/10.1016/j.jmarsys.2015.05.008

Allen, JI, Aiken, J, Anderson, TR, Buitenhuis, E, Cornell, S, Geider, RJ, Haines, K, Hirata, T, Holt, JT, Le Quere, C, Hardman-Mountford, NJ, Ross, RN, Sinha, B and While, J 2010 Marine ecosystem models for earth systems applications: The MarQUEST experience. Journal of Marine Systems, 81 (1-. 19 - 33. https://doi.org/10.1016/j.jmarsys.2009.12.017

Allen, JI, Blackford, JC, Cheung, W and Fulton, EA 2013 Overview of the third Advances in Marine Ecosystem Modelling Research (AMEMR) Symposium, 27–30 June 2011, Plymouth. [Other] In: Advances in Marine Ecosystem Modelling Research (AMEMR) Symposium, Plymouth, 27 - 30 June 2011. 1-2.

Allen, JI, Blackford, JC and Radford, PJ 1998 An 1-D vertically resolved modelling study of the ecosystem dynamics of the middle and southern Adriatic Sea. Journal of Marine Systems, 18 (01-Mar). 265 - 286. https://doi.org/10.1016/S0924-7963(98)00015-3

Allen, JI, Holt, JT, Proctor, R and Blackford, JC 2007 Error quantification of a high-resolution coupled hydrodynamic-ecosystem coastal-ocean model: Part 2. Chlorophyll-a nutrients and SPM. Journal of Marine Systems, 68. 381 - 404. https://doi.org/10.1016/j.jmarsys.2007.01.005

Allen, JI and Somerfield, PJ 2009 A multivariate approach to model skill assessment. Journal of Marine Systems, 76. 83 - 94. https://doi.org/10.1016/j.jmarsys.2008.05.009

Allen, JI, Somerfield, PJ and Gilbert, FJH 2007 Quantifying uncertainty in high-resolution coupled hydrodynamic-ecosystem models. Journal of Marine Systems, 64. Mar-14. https://doi.org/10.1016/j.jmarsys.2006.02.010

Allen, JI, Somerfield, PJ and Siddorn, JR 2002 Primary and bacterial production in the Mediterranean Sea: a modelling study. Journal of Marine Systems, 33. 473 - 495. https://doi.org/10.1016/S0924-7963(02)00072-6

Artioli, Y, Blackford, JC, Butenschon, M, Holt, JT, Wakelin, SL, Thomas, H, Borges, AV and Allen, JI 2012 The carbonate system of the NW European shelf: sensitivity and model validation. Journal of Marine Systems, 102-10. Jan-13. https://doi.org/10.1016/j.jmarsys.2012.04.006

Barlow, R, Lamont, T, Viljoen, J, Airs, RL, Brewin, RJW, Tilstone, GH, Aiken, J, Woodward, EMS and Harris, C 2022 Latitudinal variability and adaptation of phytoplankton in the Atlantic Ocean. Journal of Marine Systems, 239. 103844. https://doi.org/10.1016/j.jmarsys.2022.103844

Barlow, RG, Mantoura, RFC and Cummings, DG 1998 Phytoplankton pigment distributions and associated fluxes in the Bellingshausen Sea during the austral spring 1992. Journal of Marine Systems, 17 (01-Apr). 97 - 113. https://doi.org/10.1016/S0924-7963(98)00032-3

Blackford, JC 2010 Predicting the impacts of ocean acidification: Challenges from an ecosystem perspective. Journal of Marine Systems, 81. Dec-18. https://doi.org/10.1016/j.jmarsys.2009.12.016

Blackford, JC, Allen, JI, Anderson, TR and Rose, KA 2010 Challenges for a new generation of marine ecosystem models: Overview of the Advances in Marine Ecosystem Modelling Research (AMEMR) Symposium 23-26 June 2008 Plymouth UK Preface. Journal of Marine Systems, 81. 01-Mar. https://doi.org/10.1016/j.jmarsys.2009.12.018

Blackford, JC, Allen, JI and Gilbert, FJH 2004 Ecosystem dynamics at six contrasting sites: a generic modelling study. Journal of Marine Systems, 52 (1 - 4). 191 - 215. https://doi.org/10.1016/j.jmarsys.2004.02.004

Blackford, JC, Allen, JI and de Young, B 2007 Advances in marine ecosystem modelling research. Journal of Marine Systems, 64. 01-Feb. https://doi.org/10.1016/j.jmarsys.2006.05.001

Blackford, JC and Burkill, PH 2002 Planktonic community structure and carbon cycling in the Arabian Sea as a result of monsoonal forcing: the application of a generic model. Journal of Marine Systems, 36 (03-Apr). 239 - 267. https://doi.org/10.1016/S0924-7963(02)00182-3

Blackford, JC and Gilbert, FJH 2007 pH variability and CO2 induced acidification in the North Sea. Journal of Marine Systems, 64. 229 - 241. https://doi.org/10.1016/j.jmarsys.2006.03.016

Cross, J, Nimmo-Smith, WAM, Hosegood, PJ and Torres, R 2014 The dispersal of phytoplankton populations by enhanced turbulent mixing in a shallow coastal sea. Journal of Marine Systems, 136. 55-64. https://doi.org/10.1016/j.jmarsys.2014.03.009

Cunningham, A, McKee, D, Craig, S, Tarran, GA and Widdicombe, CE 2003 Fine-scale variability in phytoplankton community structure and inherent optical properties measured from an autonomous underwater vehicle. Journal of Marine Systems, 43 (01-Feb). 51 - 59. https://doi.org/10.1016/S0924-7963(03)00088-5

Dippner, JW and Krause, M 2013 Continuous Plankton Recorder Underestimates Zooplankton Abundance. Journal of Marine Systems, 111-11. 263-268.

Drinkwater, KF, Beaugrand, G, Kaeriyama, M, Kim, S, Ottersen, G, Perry, RI, Portner, HO, Polovina, JJ and Takasuka, A 2010 On the processes linking climate to ecosystem changes. Journal of Marine Systems, 79 (3-4). 374-388.

Edwards, ES, Burkill, PH and Sleigh, MA 1998 Microbial community structure in the marginal ice zone of the Bellingshausen Sea. Journal of Marine Systems, 17 (01-Apr). 87 - 96. https://doi.org/10.1016/S0924-7963(98)00031-1

Friedrichs, MAM, Carr, ME, Barber, RT, Scardi, M, Antoine, D, Armstrong, RA, Asanuma, I, Behrenfeld, M, Buitenhuis, E, Chai, F, Christian, JR, Ciotti, AM, Doney, SC, Dowell, M, Dunne, J, Gentili, B, Gregg, W, Hoepffner, N, Ishizaka, J, Kameda, T, Lima, I, Marra, J, Melin, F, Moore, JK, Morel, A, O'Malley, RT, O'Reilly, J, Saba, VS, Schmeltz, M, Smyth, TJ, Tjiputra, JF, Waters, K, Westberry, TK and Wingnuth, A 2009 Assessing the uncertainties of model estimates of primary productivity in the tropical Pacific Ocean. Journal of Marine Systems, 76. 113 - 133. https://doi.org/10.1016/j.jmarsys.2008.05.010

Glibert, PM, Allen, JI, Bouwman, AF, Brown, CW, Flynn, KJ, Lewitus A, J and Madden, CJ 2010 Modeling of HABs and eutrophication Status advances challenges. Journal of Marine Systems, 83 (3. 262 - 275. https://doi.org/10.1016/j.jmarsys.2010.05.004

Green, JC, Course, PA and Tarran, GA 1996 The life-cycle of Emiliania huxleyi: A brief review and a study of relative ploidy levels analysed by flow cytometry. Journal of Marine Systems, 9 (01-Feb). 33 - 44. https://doi.org/10.1016/0924-7963(96)00014-0

Groom, SB, Martinez Vicente, V, Fishwick, J, Tilstone, GH, Moore, GF, Smyth, TJ and Harbour, D 2009 The Western English Channel observatory: Optical characteristics of station L4. Journal of Marine Systems, 77. 278 - 295. https://doi.org/10.1016/j.jmarsys.2007.12.015

Harris, RP 1996 Coccolithophorid dynamics: The European Emiliania huxleyi programme EHUX. Journal of Marine Systems, 9 (01-Feb). 01-Nov. https://doi.org/10.1016/0924-7963(96)00012-7

Harris, V, Olhede, S and Edwards, M 2015 Multidecadal spatial reorganisation of plankton communities in the North East Atlantic. Journal of Marine Systems, 142. 16-24. https://doi.org/10.1016/j.jmarsys.2014.09.002

Hirata, T, Saux-Picart, S, Hashioka, T, Aita-Noguchi, M, Sumata, H, Shigemitsu, M, Allen, JI and Yamanaka, Y 2013 A comparison between phytoplankton community structures derived from a global 3D ecosystem model and satellite observation. Journal of Marine Systems, 109-11. 129 - 137. https://doi.org/10.1016/j.jmarsys.2012.01.009

Holligan, PM, Charalampopoulou, A and Hutson, RC 2010 Seasonal distributions of the coccolithophore Emiliania huxleyi and of particulate inorganic carbon in surface waters of the Scotia Sea. Journal of Marine Systems, 82 (4). 195 - 205. https://doi.org/10.1016/j.jmarsys.2010.05.007

Holt, JT, Allen, JI, Proctor, R and Gilbert, FJH 2005 Error quantification of a high-resolution coupled hydrodynamic-ecosystem coastal-ocean model: Part 1 model overview and assessment of the hydrodynamics. Journal of Marine Systems, 57. 167 - 188. https://doi.org/10.1016/j.jmarsys.2005.04.008

Houliez, E, Simis, SGH, Nenonen, S, Ylöstalo, P and Seppälä, J 2017 Basin-scale spatio-temporal variability and control of phytoplankton photosynthesis in the Baltic Sea: The first multiwavelength fast repetition rate fluorescence study operated on a ship-of-opportunity. Journal of Marine Systems, 169. 40-51. https://doi.org/10.1016/j.jmarsys.2017.01.007

Huthnance, JM, Van Aken, HM, White, M, Barton, ED, Le Cann, B, Coelho, EF, Fanjul, EA, Miller, PI and Vitorino, J 2002 Ocean margin exchange - water flux estimates. Journal of Marine Systems, 32 (01-Mar). 107 - 137. https://doi.org/10.1016/S0924-7963(02)00034-9

Ibanez, F and Beaugrand, G 2008 Monitoring marine plankton ecosystems: Identification of the most relevant indicators of the state of an ecosystem. Journal of Marine Systems, 73 (1-2). 138-154.

Joint, IR, Groom, SB, Wollast, R, Chou, L, Tilstone, GH, Figueiras, FG, Loijens, M and Smyth, TJ 2002 The response of phytoplankton production to periodic upwelling and relaxation events at the Iberian shelf break: estimates by the C-14 method and by satellite remote sensing. Journal of Marine Systems, 32 (01-Mar). 219 - 238. https://doi.org/10.1016/S0924-7963(02)00037-4

Kersalé, M, Petrenko, AA, Doglioli, AM, Nencioli, F, Bouffard, J, Blain, S, Diaz, F, Labasque, T, Queguiner, B and Dekeyser, I 2016 Lateral diffusivity coefficients from the dynamics of a SF6 patch in a coastal environment. Journal of Marine Systems, 153. 42-54. https://doi.org/10.1016/j.jmarsys.2015.09.003

Kitidis, V, Tizzard, L, Uher, G, Judd, AG, Upstill-Goddard, RC, Head, IM, Gray, ND, Taylor, G, Duran, R, Diez, R, Iglesias, JIP and Garcia-Gil, S 2007 The biogeochemical Cycling of Methane in Ria de Vigo NW Spain: Sediment Processing and Sea-Air exchange. Journal of Marine Systems, 66. 258 - 271. https://doi.org/10.1016/j.jmarsys.2006.03.022

Lamy, F, Sherwin, T, Soetaert, K, Herman, PMJ and Torres, R 2001 Estimates of vertical mixing during a Lagrangian experiment off the Galician coast. Journal of Marine Systems, 30 (3-4). 165-179. https://doi.org/10.1016/S0924-7963(01)00057-4

Leterme, SSC and Pingree, RD 2008 The Gulf Stream rings and North Atlantic eddy structures from remote sensing (Altimeter and SeaWiFS). Journal of Marine Systems, 69. 177 - 190.

Lewis, K and Allen, JI 2009 Validation of a hydrodynamic-ecosystem model simulation with time-series data collected in the western English Channel. Journal of Marine Systems, 77. 296 - 311. https://doi.org/10.1016/j.jmarsys.2007.12.013

Lewis, K, Allen, JI, Richardson, AJ and Holt, JT 2006 Error quantification of a high resolution coupled hydrodynamic-ecosystem coastal-ocean model: Part3 validation with Continuous Plankton Recorder data. Journal of Marine Systems, 63 (3 - 4). 209 - 224. https://doi.org/10.1016/j.jmarsys.2006.08.001

Mackas, DL and Beaugrand, G 2010 Comparisons of zooplankton time series. Journal of Marine Systems, 79 (3-4). 286-304.

McQuatters-Gollop, A, Mee, LD, Raitsos, DE and Shapiro, GI 2008 Non-linearities, regime shifts and recovery: The recent influence of climate on Black Sea chlorophyll. Journal of Marine Systems, 74 (1-2). 649-658.

Merino, G, Barange, M and Mullon, C 2010 Climate variability and change scenarios for a marine commodity: Modelling small pelagic fish fisheries and fishmeal in a globalized market. Journal of Marine Systems, 81. 196 - 205. https://doi.org/10.1016/j.jmarsys.2009.12.010

Mieszkowska, N, Burrows, MT, Pannacciulli, FG and Hawkins, SJ 2014 Multidecadal signals within co-occurring intertidal barnacles Semibalanus balanoides and Chthamalus spp. linked to the Atlantic Multidecadal Oscillation. Journal of Marine Systems, 133. 70-76. https://doi.org/10.1016/j.jmarsys.2012.11.008

Miller, PI 2009 Composite front maps for improved visibility of dynamic sea-surface features on cloudy SeaWiFS and AVHRR data. Journal of Marine Systems, 78. 327 - 336. https://doi.org/10.1016/j.jmarsys.2008.11.019

Muacho, S, da Silva, JCB, Brotas, V, Oliveira, PB and Magalhaes, JM 2014 Chlorophyll enhancement in the central region of the Bay of Biscay as a result of internal tidal wave interaction. Journal of Marine Systems, 136. 22-30. https://doi.org/10.1016/j.jmarsys.2014.03.016

Oubelkheir, K and Sciandra, A 2008 Diel variations in particle stocks in the oligotrophic waters of the Ionian Sea (Mediterranean). Journal of Marine Systems, 74(1-2. 364 - 371. https://doi.org/10.1016/j.jmarsys.2008.02.008

Owens, NJP, Hosie, GW, Batten, SD, Edwards, M, Johns, DG and Beaugrand, G 2013 All plankton sampling systems underestimate abundance: Response to “Continuous plankton recorder underestimates zooplankton abundance” by J.W. Dippner and M. Krause. Journal of Marine Systems, 128. 240-242.

Painter, SC, Sanders, R, Waldron, HN, Lucas, MI, Woodward, EMS and Chamberlain, K 2008 Nitrate uptake along repeat meridional transects of the Atlantic Ocean. Journal of Marine Systems, 74 (1-. 227 - 240. https://doi.org/10.1016/j.jmarsys.2007.12.009

Petihakis, G, Triantafyllou, G, Allen, IJ, Hoteit, I and Dounas, C 2002 Modelling the spatial and temporal variability of the Cretan Sea ecosystem. Journal of Marine Systems, 36 (03-Apr). 173 - 196. https://doi.org/10.1016/S0924-7963(02)00186-0

Porter, M, Inall, M, Green, JAM, Simpson, JH, Dale, AC and Miller, PI 2016 Drifter observations in the summer time Bay of Biscay slope current. Journal of Marine Systems, 157. 65-74. https://doi.org/10.1016/j.jmarsys.2016.01.002

Roy, S, Broomhead, DS, Platt, T, Sathyendranath, S and Ciavatta, S 2012 Sequential variations of phytoplankton growth and mortality in an NPZ model: A remote-sensing-based assessment. Journal of Marine Systems, 92. 16 - 29. https://doi.org/10.1016/j.jmarsys.2011.10.001

Schmidt, S, Harlay, J, Borges, AV, Groom, SB, Delille, B, Roevros, N, Christodoulou, S and Chou, L 2013 Particle export during a bloom of Emiliania huxleyi in the North-West European continental margin. Journal of Marine Systems, 109-11. S182-S190. https://doi.org/10.1016/j.jmarsys.2011.12.005

Shutler, J, Smyth, TJ, Saux-Picart, S, Wakelin, SL, Hyder, P, Orekhov, P, Grant, MG, Tilstone, GH and Allen, JI 2011 Evaluating the ability of a hydrodynamic ecosystem model to capture inter- and intra-annual spatial characteristics of chlorophyll-a in the north east Atlantic. Journal of Marine Systems, 88. 169 - 182. https://doi.org/10.1016/j.jmarsys.2011.03.013

Siddorn, JR, Allen, JI, Blackford, JC, Gilbert, FJH, Holt, JT, Holt, M, Osbourne, J, Proctor, R and Mills, DK 2007 Modelling the hydrodynamics and ecosystem of the North-West European continental shelf for operational oceanography. Journal of Marine Systems, 65. 417 - 429. https://doi.org/10.1016/j.jmarsys.2006.01.018

Skákala, J and Smyth, TJ 2016 Simple heterogeneity parametrization for sea surface temperature and chlorophyll. Journal of Marine Systems, 158. 52-58. https://doi.org/10.1016/j.jmarsys.2016.01.010

Stow, C, Jolliff, J, McGillicuddy, DJ, Doney, SC, Allen, JI, Friedrichs, MAM, Rose, KA and Wallheadg, P 2009 Skill assessment for coupled biological/physical models of marine systems. Journal of Marine Systems, 01-Feb. Apr-15. https://doi.org/10.1016/j.jmarsys.2008.03.011

Stromberg, KHP, Smyth, TJ, Allen, JI, Pitois, SG and O'Brien, TD 2009 Estimation of global zooplankton biomass from satellite ocean colour. Journal of Marine Systems, 78. 18 - 27. https://doi.org/10.1016/j.jmarsys.2009.02.004

Torres, R, Allen, JI and Figueiras, FG 2006 Sequential data assimilation in an upwelling influenced estuary. Journal of Marine Systems. 0 - 0. https://doi.org/10.1016/j.jmarsys.2006.02.001

Tyrrell, T and Taylor, AH 1996 A modelling study of Emiliania huxleyi in the NE Atlantic. Journal of Marine Systems, 9 (01-Feb). 83 - 112. https://doi.org/10.1016/0924-7963(96)00019-X

Uncles, RJ, Stephens, JA and Murphy, RJ 1997 Aircraft and sea-truth observations of a small-scale estuarine intrusion front. Journal of Marine Systems, 12 (01-Apr). 199 - 219. https://doi.org/10.1016/S0924-7963(96)00098-X

Wakelin, SL, Artioli, Y, Butenschon, M, Allen, JI and Holt, JT 2015 Modelling the combined impacts of climate change and direct anthropogenic drivers on the ecosystem of the northwest European continental shelf. Journal of Marine Systems, 152. 51-63. https://doi.org/10.1016/j.jmarsys.2015.07.006

Woolf, DK, Leifer, S, Nightingale, PD, Rhee, TS, Bowyer, P, Caulliez, G, de Leeuw, G, Larsen, SE, Liddicoat, MI, Baker, JM and Andreae, MO 2007 Modelling of bubble-mediated gas transfer: Fundamental principles and a laboratory test. Journal of Marine Systems, 66. 71 - 91. https://doi.org/10.1016/j.jmarsys.2006.02.011

Yebra, L, Harris, RP, Wilson, R, Davidson, R and Montagnes, DJ 2006 Epizooplankton summer production in the Irminger Sea. Journal of Marine Systems, 62. 1 - 8. https://doi.org/10.1016/j.jmarsys.2006.04.001

Zhai, L, Platt, T, Tang, CLC, Sathyendranath, S, Fuentes-Yaco, C, Devred, E and Wu, Y 2010 Seasonal and geographic variations in phytoplankton losses from the mixed layer on the Northwest Atlantic Shelf. Journal of Marine Systems, 80. 36 - 46. https://doi.org/10.1016/j.jmarsys.2009.09.005

Zhai, L, Tang, CLC, Platt, T and Sathyendranath, S 2011 Ocean response to attenuation of visible light by phytoplankton in the Gulf of St. Lawrence. Journal of Marine Systems, 88. 285 - 297. https://doi.org/10.1016/j.jmarsys.2011.05.005