Items where Author is "Bruggeman, J"

Bruggeman, J, Bolding, K, Nerger, L, Teruzzi, A, Spada, S, Skákala, J and Ciavatta, S 2024 EAT v0.9.6: a 1D testbed for physical-biogeochemical data assimilation in natural waters. https://doi.org/10.5194/gmd-2023-238 (In Press)

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Skákala, J, Bruggeman, J, Ford, D, Wakelin, S, Akpınar, A, Hull, T, Kaiser, J, Loveday, BR, O’Dea, E, Williams, CAJ and Ciavatta, S 2022 The impact of ocean biogeochemistry on physics and its consequences for modelling shelf seas. Ocean Modelling, 172. 101976. https://doi.org/10.1016/j.ocemod.2022.101976

Cazenave, PW, Dewar, M, Torres, R, Blackford, JC, Bedington, M, Artioli, Y and Bruggeman, J 2021 Optimising environmental monitoring for carbon dioxide sequestered offshore. International Journal of Greenhouse Gas Control, 110. 103397. https://doi.org/10.1016/j.ijggc.2021.103397

Skákala, J, Ford, D, Bruggeman, J, Hull, T, Kaiser, J, King, RR, Loveday, BR, Palmer, MR, Smyth, TJ, Williams, CAJ and Ciavatta, S 2021 Towards a multi‐platform assimilative system for North Sea biogeochemistry. Journal of Geophysical Research: Oceans. https://doi.org/10.1029/2020JC016649

Leles, SG, Bruggeman, J, Polimene, L, Blackford, JC, Flynn, KJ and Mitra, A 2020 Differences in physiology explain succession of mixoplankton functional types and affect carbon fluxes in temperate seas. Progress in Oceanography, 190. 102481. https://doi.org/10.1016/j.pocean.2020.102481

Chakraborty, S, Cadier, M, Visser, AW, Bruggeman, J and Andersen, KH 2020 Latitudinal Variation in Plankton Traits and Ecosystem Function. Global Biogeochemical Cycles, 34 (8). 1-25. https://doi.org/10.1029/2020GB006564

Skakala, J, Bruggeman, J, Brewin, RJW, Ford, D and Ciavatta, S 2020 Improved representation of underwater light field and its impact on ecosystem dynamics: a study in the North Sea. Journal of Geophysical Research: Oceans. 1, pp. https://doi.org/10.1029/2020JC016122 (In Press)

Powley, HR, Bruggeman, J, Hopkins, J, Smyth, TJ and Blackford, JC 2020 Sensitivity of shelf sea marine ecosystems to temporal resolution of meteorological forcing. Journal of Geophysical Research: Oceans. 1-32. https://doi.org/10.1029/2019JC015922

Wentzky, VC, Tittel, J, Jäger, CG, Bruggeman, J, Rinke, K and Nilsson, C 2020 Seasonal succession of functional traits in phytoplankton communities and their interaction with trophic state. Journal of Ecology. https://doi.org/10.1111/1365-2745.13395

Talbot, E, Bruggeman, J, Hauton, C and Widdicombe, S 2019 Uncovering the environmental drivers of short-term temporal dynamics in an epibenthic community from the Western English Channel. Journal of the Marine Biological Association of the United Kingdom. 1-13. https://doi.org/10.1017/S0025315419000663

Lessin, G, Bruggeman, J, McNeill, CL and Widdicombe, S 2019 Time scales of benthic macrofaunal response to pelagic production differ between major feeding groups. Frontiers in Marine Science, 6, supplement https://www.frontiersin.org/articles/10.3389/fmars.2019.00015/full#supplementary-material. 15, pp. https://doi.org/10.3389/fmars.2019.00015

Talbot, SE, Widdicombe, S, Hauton, C and Bruggeman, J 2018 Adapting the dynamic energy budget (DEB) approach to include non-continuous growth (moulting) and provide better predictions of biological performance in crustaceans. ICES Journal of Marine Science. https://doi.org/10.1093/icesjms/fsy164

Leles, SG, Polimene, L, Bruggeman, J, Blackford, JC, Ciavatta, S, Mitra, A and Flynn, KJ 2018 Modelling mixotrophic functional diversity and implications for ecosystem function. Journal Of Plankton Research. https://doi.org/10.1093/plankt/fby044

McClelland, HLO, Bruggeman, J, Hermoso, M and Rickaby, REM 2017 The origin of carbon isotope vital effects in coccolith calcite. Nature Communications, 8. 14511. https://doi.org/10.1038/ncomms14511

Yakushev, EV, Protsenko, EA, Bruggeman, J, Wallhead, P, Pakhomova, SV, Yakubov, SK, Bellerby, RGJ and Couture, R-M 2017 Bottom RedOx Model (BROM v.1.1): a coupled benthic–pelagic model for simulation of water and sediment biogeochemistry. Geoscientific Model Development, 10 (1). 453-482. https://doi.org/10.5194/gmd-10-453-2017

Goolsby, EW, Bruggeman, J and Ané, C 2016 Rphylopars: fast multivariate phylogenetic comparative methods for missing data and within-species variation. Methods in Ecology and Evolution, 8 (1). 22-27. https://doi.org/10.1111/2041-210X.12612

Hu, F, Bolding, K, Bruggeman, J, Jeppesen, E, Flindt, MR, van Gerven, L, Janse, JH, Janssen, ABG, Kuiper, JJ, Mooij, WM and Trolle, D 2016 FABM-PCLake – linking aquatic ecology with hydrodynamics. Geoscientific Model Development, 9 (6). 2271-2278. https://doi.org/10.5194/gmd-9-2271-2016

Butenschon, M, Clark, JR, Aldridge, JN, Allen, JI, Artioli, Y, Blackford, JC, Bruggeman, J, Cazenave, P, Ciavatta, S, Kay, S, Lessin, G, van Leeuwen, S, Van der Molen, J, de Mora, L, Polimene, L, Sailley, SF, Stephens, N and Torres, R 2016 ERSEM 15.06: a generic model for marine biogeochemistry and the ecosystem dynamics of the lower trophic levels. Geoscientific Model Development, 9 (4). 1293-1339. https://doi.org/10.5194/gmd-9-1293-2016

Beecham, J, Bruggeman, J, Aldridge, J and Mackinson, S 2016 Couplerlib: a metadata-driven library for the integration of multiple models of higher and lower trophic level marine systems with inexact functional group matching. Geoscientific Model Development, 9 (3). 947-964. https://doi.org/10.5194/gmd-9-947-2016

Janssen, ABG, Arhonditsis, GB, Beusen, A, Bolding, K, Bruce, L, Bruggeman, J, Couture, RM, Downing, AS, Alex Elliott, J, Frassl, MA, Gal, G, Gerla, DJ, Hipsey, MR, Hu, F, Ives, SC, Janse, JH, Jeppesen, E, Jöhnk, KD, Kneis, D, Kong, X, Kuiper, JJ, Lehmann, MK, Lemmen, C, Özkundakci, D, Petzoldt, T, Rinke, K, Robson, BJ, Sachse, R, Schep, SA, Schmid, M, Scholten, H, Teurlincx, S, Trolle, D, Troost, TA, Van Dam, AA, Van Gerven, LPA, Weijerman, M, Wells, SA and Mooij, WM 2015 Exploring, exploiting and evolving diversity of aquatic ecosystem models: a community perspective. Aquatic Ecology, 49 (4). 513-548. https://doi.org/10.1007/s10452-015-9544-1

Butenschon, M, Clark, JR, Aldridge, JN, Allen, JI, Artioli, Y, Blackford, JC, Bruggeman, J, Cazenave, P, Ciavatta, S, Kay, S, Lessin, G, van Leeuwen, S, Van der Molen, J, de Mora, L, Polimene, L, Sailley, SF, Stephens, N and Torres, R 2015 ERSEM 15.06: a generic model for marine biogeochemistry and the ecosystem dynamics of the lower trophic levels. Geoscientific Model Development Discussions, 8 (8). 7063-7187. https://doi.org/10.5194/gmdd-8-7063-2015

Queiros, AM, Bruggeman, J, Stephens, N, Artioli, Y, Butenschon, M, Blackford, JC, Widdicombe, S, Allen, JI and Somerfield, PJ 2015 Placing biodiversity in ecosystem models without getting lost in translation. Journal of Sea Research. https://doi.org/10.1016/j.seares.2014.10.004

Acevedo-Trejos, E, Brandt, G, Bruggeman, J and Merico, A 2015 Mechanisms shaping size structure and functional diversity of phytoplankton communities in the ocean. Scientific Reports, 5. 8918. https://doi.org/10.1038/srep08918

Bruggeman, J and Bolding, K 2014 A general framework for aquatic biogeochemical models. Environmental Modelling & Software, 61. 249-265. https://doi.org/10.1016/j.envsoft.2014.04.002

Terseleer, N, Bruggeman, J, Lancelot, C and Gypens, N 2014 Trait-based representation of diatom functional diversity in a plankton functional type model of the eutrophied southern North Sea. Limnology and Oceanography, 59 (6). 1958-1972. https://doi.org/10.4319/lo.2014.59.6.1958

Saba, VS, Friedrichs, MAM, Carr, ME, Antoine, D, Armstrong, RA, Asanuma, I, Aumont, O, Olivier, O, Bates, NR, Behrenfeld, M, Bennington, V, Bopp, L, Laurent, L, Bruggeman, J, Buitenhuis, E, Church, MJ, Ciotti, AM, Doney, SC, Dowell, M, Dunne, J, Dutkiewicz, S, Gregg, W, Hoepffner, N, Hyde, KJW, Ishizaka, J, Kameda, T, Karl, DM, Lima, I, Lomas, MW, Marra, J, McKinley, GA, Melin, F, Moore, JK, Morel, A, O'Reilly, J, Salihoglu, B, Scardi, M, Smyth, TJ, Tang, S, Tjiputra, JF, Uitz, J, Vichi, M, Waters, K, Westberry, TK and Yool, A 2010 Challenges of modeling depth-integrated marine primary productivity over multiple decades: A case study at BATS and HOT. Global Biogeochemical Cycles, 24. 0 - 0. https://doi.org/10.1029/2009GB003655

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Torres, R, Cazenave, P, Bruggeman, J, Artioli, Y and Butenschon, M 2017 Ecosystem modelling in support of Marine Spatial Planning and governance. [Poster] In: 2nd International Conference on Marine Spatial Planning, Paris, 15-17 March 2017. (Unpublished)

Bruggeman, J, Torres, R, Cazenave, P, Artioli, Y and Allen, JI 2016 Coupling FVCOM with FABM - Multiplying the Choice of Marine Ecosystem Models within FVCOM. [Lecture] In: UK FVCOM Workshop. National Oceanography Centre, Liverpool. (Unpublished)

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Cheung, WWL, Bruggeman, J and Butenschon, M 2018 Chapter 4: Projected changes in global and national potential marine fisheries catch under climate change scenarios in the twenty-first century. Food & Agriculture Organization. (UNSPECIFIED)

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Stips, A, Bolding, K, Macias, DM, Bruggeman, J and Coughlan, C 2016 Scoping report on the potential impact of on-board desulphurisation on the water quality in SOx emission control areas. Joint Research Centre (European Commission). (UNSPECIFIED)