Items where Author is "Gilbert, JA"

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Publication - Article

Lüchmann, KH; Clark, MS; Bainy, ACD; Gilbert, JA; Craft, JA; Chipman, JK; Thorne, MAS; Mattos, JJ; Siebert, MN; Schroeder, DC. 2015 Key metabolic pathways involved in xenobiotic biotransformation and stress responses revealed by transcriptomics of the mangrove oyster Crassostrea brasiliana. Aquatic Toxicology, 166. 10-20.

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Kopf, A; Bicak, M; Kottmann, R; Schnetzer, J; Kostadinov, I; Lehmann, K; Fernandez-Guerra, A; Jeanthon, C; Rahav, E; Ullrich, M; Wichels, A; Gerdts, G; Polymenakou, P; Kotoulas, G; Siam, R; Abdallah, RZ; Sonnenschein, EC; Cariou, T; O'Gara, F; Jackson, S; Orlic, S; Steinke, M; Busch, J; Duarte, B; Caçador, I; Canning-Clode, J; Bobrova, O; Marteinsson, V; Reynisson, E; Loureiro, CM; Luna, GM; Quero, GM; Löscher, CR; Kremp, A; DeLorenzo, ME; Øvreås, L; Tolman, J; LaRoche, J; Penna, A; Frischer, M; Davis, T; Katherine, B; Meyer, CP; Ramos, S; Magalhães, C; Jude-Lemeilleur, F; Aguirre-Macedo, ML; Wang, S; Poulton, N; Jones, S; Collin, R; Fuhrman, JA; Conan, P; Alonso, C; Stambler, N; Goodwin, K; Yakimov, MM; Baltar, F; Bodrossy, L; Van De Kamp, J; Frampton, DMf; Ostrowski, M; Van Ruth, P; Malthouse, P; Claus, S; Deneudt, K; Mortelmans, J; Pitois, SG; Wallom, D; Salter, I; Costa, R; Schroeder, DC; Kandil, MM; Amaral, V; Biancalana, F; Santana, R; Pedrotti, ML; Yoshida, T; Ogata, H; Ingleton, T; Munnik, K; Rodriguez-Ezpeleta, N; Berteaux-Lecellier, V; Wecker, P; Cancio, I; Vaulot, D; Bienhold, C; Ghazal, H; Chaouni, B; Essayeh, S; Ettamimi, S; Zaid, EH; Boukhatem, N; Bouali, A; Chahboune, R; Barrijal, S; Timinouni, M; El Otmani, F; Bennani, M; Mea, M; Todorova, N; Karamfilov, VK; Ten Hoopen, P; Cochrane, G; L'Haridon, S; Bizsel, KC; Vezzi, A; Lauro, FM; Martinez, PG; Jensen, RM; Hinks, J; Gebbels, S; Rosselli, R; De Pascale, F; Schiavon, R; Dos Santos, A; Villar, E; Pesant, S; Cataletto, B; Malfatti, F; Edirisinghe, R; Silveira, JAH; Barbier, M; Turk, V; Tinta, T; Fuller, WJ; Salihoglu, I; Serakinci, N; Ergoren, MC; Bresnan, E; Iriberri, J; Nyhus, PAF; Bente, E; Karlsen, HE; Golyshin, PN; Gasol, JM; Moncheva, S; Dzhembekova, N; Johnson, ZI; Sinigalliano, CD; Gidley, ML; Zingone, A; Danovaro, R; Tsiamis, G; Clark, MS; Costa, AC; El Bour, M; Martins, AM; Collins, RE; Ducluzeau, AL; Martinez, J; Costello, MJ; Amaral-Zettler, LA; Gilbert, JA; Davies, N; Field, D; Glockner, FO. 2015 The ocean sampling day consortium.. GigaScience, 4. 27.

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Laverock, B; Tait, K; Gilbert, JA; Osborn, AM; Widdicombe, S. 2013 Impacts of bioturbation on temporal variation in bacterial and archaeal nitrogen-cycling gene abundance in coastal sediments. Environmental Microbiology Reports, 6 (1). 113-121. 10.1111/1758-2229.12115

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Laverock, B; Kitidis, V; Tait, K; Gilbert, JA; Osborn, M; Widdicombe, S. 2013 Bioturbation activity determines the response of coastal benthic nitrogen-cycling microorganisms to ocean acidification. Philosophical Transactions of the Royal Society of London Series B-Biological Sciences, 368 (1627). 1-13. 10.1098/rstb.2012.0441

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Roy, A-S; Gibbons, SM; Schunck, H; Owens, S; Caporaso, JG; Sperling, M; Nissimov, JI; Romac, S; Bittner, L; Muhling, M; Riebesell, U; LaRoche, J; Gilbert, JA. 2013 Ocean acidification shows negligible impacts on high-latitude bacterial community structure in coastal pelagic mesocosms. Biogeosciences, 10 (1). 555-566. 10.5194/bg-10-555-2013

Sperling, M; Piontek, J; Gerdts, G; Wichels, A; Schunck, H; Roy, A-S; La Roche, J; Gilbert, JA; Nissimov, JI; Bittner, L; Romac, S; Riebesell, U; Engel, A. 2013 Effect of elevated CO<sub>2</sub> on the dynamics of particle-attached and free-living bacterioplankton communities in an Arctic fjord. Biogeosciences, 10 (1). 181-191. 10.5194/bg-10-181-2013

Willetts, AJ; Joint, IR; Gilbert, JA; Trimble, W; Muhling, M. 2012 Isolation and initial characterization of a novel type of Baeyer-Villiger monooxygenase activity from a marine microorganism. Microbial Biotechnology, 5. 549 - 559. 10.1111/j.1751-7915.2012.00337.x

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Gilbert, JA; Steele, JA; Caporaso, JG; Steinbruck, L; Reeder, J; Temperton, B; Huse, S; McHardy, AC; Knight, R; Joint, IR; Somerfield, PJ; Fuhrman, J; Field, D. 2012 Defining seasonal marine microbial community dynamics. ISME Journal - Multidisciplinary Journal of Microbial Ecology, 6. 298 - 308. 10.1038/ismej.2011.107

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Gilbert, JA; Dupont, CL. 2011 Microbial Metagenomics: Beyond the Genome. Annual Review of Marine Science, 3. 347 - 371. 10.1146/annurev-marine-120709-142811

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Gilbert, JA; Meyer, F; Schriml, L; Joint, IR; Muhling, M; Field, D. 2011 Metagenomes and metatranscriptomes from the L4 long-term coastal monitoring station in the Western English Channel. Standards in Genomic Science, 3. 183 - 193.

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Yilmaz, P; Kottmann, R; Field, D; Knight, R; Cole, JR; Amaral-Zettler, L; Gilbert, JA; Karsch-Mizrachi, I; Johnston, A; Cochrane, G. 2011 Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology, 29. 415 - 420. 10.1038/nbt.1823

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Jeffries, TC; Seymour, JR; Gilbert, JA; Dinsdale, EA; Newton, K; Leterme, SSC; Roudnew, B; Smith, RJ; Seuront, L; Mitchell, JG. 2011 Substrate Type Determines Metagenomic Profiles from Diverse Chemical Habitats. PLoS one, 6. 0 - 0. 10.1371/journal.pone.0025173

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Temperton, B; Thomas, S; Tait, K; Parry, HE; Emery, M; Allen, MJ; Quinn, JP; McGrath, JW; Gilbert, JA. 2011 Permanent draft genome sequence of Vibrio tubiashii strain NCIMB 1337 (ATCC19106). Standards in Genomic Science, 4. 183 - 190. 10.4056/sigs.1654066

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Laverock, B; Gilbert, JA; Tait, K; Osborn, M; Widdicombe, S. 2011 Bioturbation: impact on the marine nitrogen cycle. Biochemical Society Transactions, 39. 315 - 320. 10.1042/BST0390315

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Turk, KA; Rees, AP; Zehr, JP; Pereira, N; Swift, P; Shelley, RU; Lohan, M; Woodward, EMS; Gilbert, JA. 2011 Nitrogen fixation and nitrogenase (nifH) expression in tropical waters of the eastern North Atlantic. ISME Journal - Multidisciplinary Journal of Microbial Ecology. 01-Dec. 10.1038/ismej.2010.205

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Temperton, B; Gilbert, JA; Quinn, JP; McGrath, JW. 2011 Novel Analysis of Oceanic Surface Water Metagenomes Suggests Importance of Polyphosphate Metabolism in Oligotrophic Environments. PLoS one, 1. 0016499 - 0016499. 10.1371/journal.pone.0016499

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Gilbert, JA; Field, D; Swift, P; Thomas, S; Cummings, DG; Temperton, B; Weynberg, KD; Huse, S; Hughes, M; Joint, IR; Somerfield, PJ; Muhling, M. 2010 The Taxonomic and Functional Diversity of Microbes at a Temperate Coastal Site: A 'Multi-Omic' Study of Seasonal and Diel Temporal Variation. PLoS one, 5. Jan-17. 10.1371/journal.pone.0015545

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Mitra, S; Gilbert, JA; Field, D; Huson, DH. 2010 Comparison of multiple metagenomes using phylogenetic networks based on ecological indices. ISME Journal - Multidisciplinary Journal of Microbial Ecology, 4. 1236 - 1242. 10.1038/ismej.2010.51

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Laverock, B; Widdicombe, S; Tait, K; Smith, C; Osborn, M; Gilbert, JA. 2010 Bioturbating shrimp alter the structure and diversity of bacterial communities in coastal marine sediments. ISME Journal - Multidisciplinary Journal of Microbial Ecology, 4. 1531 - 1544. 10.1038/ismej.2010.86

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Field, D; Friedburg, I; Sterk, P; Kottmann, R; Glockner, FO; Hirschman, L; Garrity, G; Cochrane, G; Wooley, J; Gilbert, JA. 2010 Meeting Report: Metagenomics Metadata and Meta-analysis (M3) Special Interest Group at ISMB 2009. Standards in Genomic Science, 1. 01-Mar.

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Hirschman, L; Sterk, P; Field, D; Wooley, J; Cochrane, G; Gilbert, JA; Kolker, E; Kyrpides, N; Meyer, F; Mizrachi, I; Nakamura, Y; Sansone, S; Schriml, L; Tatusova, T; White, O; Yilmaz, P. 2010 Meeting Report: Metagenomics Metadata and Meta-analysis (M3) Workshop at the Pacific Symposium on Biocomputing 2010. Standards in Genomic Science, 2. 01-Mar.

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Gilbert, JA. 2010 Beyond the Infinite - tracking bacterial gene expression. Microbiology Today, 2. 82 - 85.

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Gilbert, JA; Meyer, F; Schriml, L; Joint, IR; Muhling, M; Field, D. 2010 Metagenomes and metatranscriptomes from the L4 long-term coastal monitoring station in the Western English Channel. Standards in Genomic Science, 3. 183 - 193. 10.4056/sigs.1202536

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Heidelberg, KB; Gilbert, JA; Joint, IR. 2010 Marine genomics: at the interface of marine microbial ecology and biodiscovery. Microbial Biotechnology, 3. 531 - 543. 10.1111/j.1751-7915.2010.00193.x

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Thomas, S; Burdett, HL; Temperton, B; Wick, R; Snelling, D; McGrath, JW; Quinn, JP; Munn, CB; Gilbert, JA. 2010 The diversity of phnA gene homologues in temperature-stressed Cnidarian-associated Bacteria. ISME Journal - Multidisciplinary Journal of Microbial Ecology. 0 - 0.

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Craft, J; Gilbert, JA; Temperton, B; Dempsey, KE; Ashelford, K; Tiwari, B; Hutchinson, TH; Chipman, JK. 2010 Pyrosequencing of Mytilus galloprovincialis cDNAs: Tissue-Specific Expression Patterns. PLoS one, 5. 01-May. 10.1371/journal.pone.0008875

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Gilbert, JA; Field, D; Swift, P; Newbold, L; Oliver, A; Smyth, TJ; Somerfield, PJ; Huse, S; Joint, IR. 2009 The seasonal structure of microbial communities in the Western English Channel. Environmental Microbiology, 12. 3132 - 3139. 10.1111/j.1462-2920.2009.02017.x

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Temperton, B; Field, D; Oliver, A; Tiwari, B; Muhling, M; Joint, IR; Gilbert, JA. 2009 Bias in assessments of marine microbial biodiversity in fosmid libraries as evaluated by pyrosequencing. ISME Journal - Multidisciplinary Journal of Microbial Ecology, 3. 792 - 796. 10.1038/ismej.2009.32

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Kulakova, A; Kulakov, L; Villarreal-Chiu, J; Gilbert, JA; McGrath, JW; Quinn, JP. 2009 Expression of the phosphonoalanine-degradative gene cluster from Variovorax sp Pal2 is induced by growth on phosphonoalanine and phosphonopyruvate. FEMS Microbiology Letters, 1. 100 - 106. 10.1111/j.1574-6968.2008.01477.x

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Rees, AP; Gilbert, JA; Kelly-Gerreyn, BA. 2009 Nitrogen fixation in the western English Channel (NE Atlantic Ocean). Marine Ecology Progress Series, 374. 07-Dec. 10.3354/meps07771

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Gilbert, JA; Thomas, S; Cooley, NA; Kulakova, A; Field, D; Booth, T; McGrath, JW; Quinn, JP; Joint, IR. 2009 Potential for phosphonoacetate utilization by marine bacteria in temperate coastal waters. Environmental Microbiology, 11. 111 - 125. 10.1111/j.1462-2920.2008.01745.x

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Gilbert, JA; Field, D; Huang, Y; Edwards, R; Li, W; Gilna, P; Joint, IR. 2008 Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities. PLoS one, 3. Jan-13. 10.1371/journal.pone.0003042

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Sansone, S; Rocca-Serra, P; Brandizi, M; Brazma, A; Field, D; Fostel, J; Garrow, AG; Gilbert, JA; Goodsaid, F; Hardy, N; Jones, P; Lister, A; Miller, M; Morrison, N; Rayner, T; Skylar, N; Taylor, C; Tong, W; Warner, G; Weimann, S. 2008 The first RSBI (ISA-TAB) workshop: Can a Simple Format Work for Complex Studies?. OMICS: A Journal of Integrative Biology, 12. 143 - 149. 10.1089/omi.2008.0019

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Field, D; Garrity, G; Gray, T; Morrison, N; Selengut, J; Sterk, P; Tatusova, T; Thomson, N; Allen, MJ; Angiuolii, SV; Ashburner, M; Axelrod, N; Baldauf, S; Ballard, S; Boore, J; Cochrane, G; Cole, JR; Dawyndt, P; de Vos, P; de Pamphillis, C; Edwards, R; Faruque, N; Feldman, R; Gilbert, JA; Gilna, P; Glockner, FO; Goldstein, P; Guralnick, R; Haft, D; Hancock, D; Hermjakob, H; Hertz-Fowler, C; Hugenholtz, P; Joint, IR; Kagan, L; Kane, M; Kennedy, J; Kowalchuk, G; Kottmann, R; Kolker, E; Kravitz, S; Kyrpides, N; Leebans-Mack, J; Lewis, SC. 2008 The minimum information about a genome sequence (MIGS) specification. Nature Biotechnology, 26. 541 - 547. 10.1038/nbt1360

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Gilbert, JA; Muhling, M; Joint, IR. 2008 A rare SAR11 fosmid clone confirming genetic variability in the 'Candidatus Pelagibacter ubique' genome. ISME Journal - Multidisciplinary Journal of Microbial Ecology. Jan-15. 10.1038/ismej.2008.49

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Booth, T; Gilbert, JA; Neufeld, JD; Ball, J; Thurston, M; Chipman, K; Joint, IR; Field, D. 2007 Handlebar: a flexible web-based inventory manager for handling barcoded samples. Biotechniques, 42. 300 - 302. 10.2144/000112385

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Publication - Book

Gilbert, JA; Field, D; Huang, Y; Edwards, R; Li, W. 2010 Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities. UNSPECIFIED, 0 - 0.

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Gilbert, JA. 2010 Aquatic metagenome library (archive; expression) generation and analysis. UNSPECIFIED, 4347 - 4352.

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Gilbert, JA; Zhang, K; Neufeld, JD. 2010 Multiple displacement amplification. UNSPECIFIED, 4255 - 4263.

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Publication - Book Section

Gilbert, JA; Hughes, M. 2011 Gene Expression Profiling: Metatranscriptomics. In: UNSPECIFIED UNSPECIFIED, 195 - 205.

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Gilbert, JA; Laverock, B; Temperton, B; Thomas, S; Muhling, M; Hughes, M. 2011 Metagenomics. In: UNSPECIFIED UNSPECIFIED, 173 - 183.

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This list was generated on Mon Sep 25 08:00:39 2017 UTC.